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53-2968-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24590367 [Map]; Strand: w
      • AT5G61130.1 - [+] show detail - plasmodesmata callose-binding protein 1
        Distance: -787; Region: promoter
      • AT5G61140.2 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: intron1 (CDS)
      • AT5G61140.1 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-2968-1 - 5-prime edge 
    CTCCAAACTC TTAATAAGCC TCGCAGGTCC GTTTTTTTCT TTCCGAACTG 
    ATTCCACTCG TTTACTAAGT TGTCAGCGAG TTCTATAGCA TCTGTTTGGT 
    GCTATATCGA ATTTGATAGT TGTATAGTCT GGTGATCACA ATGTCTAAGT 
    AGAATTTGGA AAGCATTTGG AAATACTTGA ATTGAATTGG ACTATTGTGT 
    TACTTGTGTT TGCCATTTCA GCTCCGGTAA TCGCCTTGAT GAATCTGACC 
    TTGCTAAGAG GATAGTTCAT CAATGGGAAG GAGGTGATTT TATGATGATA 
    TCTATTTTTT CCCAATTTCT CTATAAAAGA TGGTGTTGTG TGTATATTGA 
    TTGGAATTGG TGTGACAGCT TCTCTCGAAG TGCGACAAGC ATACAAGCAG 
    TTTATTGGAG CTGTAGTGGA ATTGATTGAT CGGGAAGTTC CATCAGATGA 
    GTTTCNCGAG GTTGCTTTTT CCGCTTATNG NCTGNNANCA ATCCANNGGA 
    GGAAGATGAT NGTGANATCA ATGATAATAT AAGCATTNNC GGGAANAANT 
    AAGACTGNTN ATNCTGTNNN AAAATNGNAN GGNGNTTNNN NNNTNNNNNA 
    CCATGCTGAA NCAANATNNN NNANATNNTN NNCNNGGCCC NNANNNTGGG 
    NGTNTTTNNG GNGNNCANAA AAAANTNNAG TNNTTANNAN NAAAAAAAAA 
    AAGTGGGNGN GNCTTNTNAA N

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24590251 [Map]; Strand: w
      • AT5G61130.1 - [+] show detail - plasmodesmata callose-binding protein 1
        Distance: -671; Region: promoter
      • AT5G61140.2 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: exon1 (CDS)
      • AT5G61140.1 - [+] show detail - U5 small nuclear ribonucleoprotein helicase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-2968-1 - 3-prime edge 
    GTTTGGAGTA TAGTTTTGCG GCGAAGGTAA GCCTGATCGA TGTCGAAAGG 
    CTCTCTAAGA GAGCTTGTCA AGCGAGGAAG CTGAACTAAC ATGACAAAAT 
    CCCTGTACTT GTGTCGTTTA GGATTCTTCT CCTCTGTGGT GTTTTCACCT 
    CTGGTCGGCT CTCCGAGGAA GAAGGCGATC GCTTGCGTTC TAAAACGGCG 
    TCGGTTAGAT ACTTGAACAA ATAGGCCCGT ACACCGACCC GCTAAGATAC 
    GGGTCCACGA AATCGACGTC GTTTTATGTT TATTACATGG GGAGTTGTGG 
    ACCATGACTA AATTATTCTT TTTTTATTAT TATCGGTAGA GAATTTTTTT 
    GAATTAATAA CAAGACAATT AAAAATAAAA TACACAAAAT ATTATACTTT 
    TTTTTTACT

AT5G61130.1

Model type
Protein coding
Short Description
plasmodesmata callose-binding protein 1
Curator Summary
Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.
Computational Description
plasmodesmata callose-binding protein 1 (PDCB1); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: callose deposition in cell wall; LOCATED IN: plasmodesma, anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 2214 Blast hits to 2014 proteins in 207 species: Archae - 0; Bacteria - 106; Metazoa - 136; Fungi - 241; Plants - 1436; Viruses - 12; Other Eukaryotes - 283 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61140.1

Model type
Protein coding
Short Description
U5 small nuclear ribonucleoprotein helicase
Curator Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
Computational Description
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61140.2

Model type
Protein coding
Short Description
U5 small nuclear ribonucleoprotein helicase
Curator Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
Computational Description
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2).
Link
InterPro Scan - TAIR