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53-3024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5438683 [Map]; Strand: w
      • AT5G16600.1 - [+] show detail - myb domain protein 43
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3024-1 - 5-prime edge 
    CTTNGATAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CTNNGGANAN CGAANGATCA NAANANGTTG 
    TGTCCCAAGC TACCAGACCG GGNCGTCNNN CACNCAGTGC TCTATNCAAC 
    GCAAGANAAT GACAATAATT CTCACCTTAC TTTTTGCAAT GGAATATATA 
    TCCCTTNTTC TGATTNCAAA ACATATTATT AGTTTGTTAA TCATAGTGTT 
    TGGCTGATAC AATCAGTGTT TGATTTTCGT GGTCCTCACA CGCTATTATT 
    TGGTTTTTAA TCAATTTTAG TTTTATAGTT NTTAAGTTTA AATTAAATTG 
    ATCGTTGATT TAATTACTTT GTTTACAAAT TAAATGCAGG ACTATTGCGG 
    TGTGGTAAAA GCTGCAGATT AAGATGGATA AATTATTTAA GACCTGATTT 
    AAAAAGAGGT CTTTTATCAG AATATGAAGA ACAAAAGGTC ATTAATCTCC 
    ATGCGCAACT TGGCAATAGG TNCATTCTCT TTCTCCTGAA AACAATTATT 
    CCTACAAACA ATAATTTACT TACTTTAACT ATGACGGTNT ANCTAACTCA 
    TAGTAAAAGT ATATAANGGN NTATATNTNT GACCATTATA TGNCAATATT 
    CNCAAGNTAT CGGGANAAAC ACANAAGTCN GNNTGNAGGC GGATTTAGAC 
    TCGAACTTTA NCTAATCTTN NGCAGNAAAA AGATTACCTA TCANANGNTC 
    NTTATTTAGC CNATATTTTN NCAGGNNGNG GNGGTTNAAT TTNANTTNGN 
    NTGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5438642 [Map]; Strand: w
      • AT5G16600.1 - [+] show detail - myb domain protein 43
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3024-1 - 3-prime edge 
    GTCTAAAGAA CTCATGAAAA CTACTAGGTA ATGAATAAAA AAAAGGTAAA 
    TAAAATAGGA ATCATGTAGG AGTGAGATGG GTCTATAACT GAAAAATCGG 
    AAACTTGAAT GAAAACAAGA AATGTACTTT TTTCAAAAAA ACAAAGAAAG 
    TAGTATCNGT TTTCGTCGGT AAGATTTAAG GTAAAGAAAA AGTGTGAAGC 
    AAAACTGAAA TTTCTAAACA TGAGCCATCA CAAACGGTGT CTTGTTAAGT 
    TAAGAGAAAG AGAGATAATA AACCAGAAAG CT

AT5G16600.1

Model type
Protein coding
Short Description
myb domain protein 43
Curator Summary
Encodes a putative transcription factor (MYB43).
Computational Description
myb domain protein 43 (MYB43); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 20 (TAIR:AT1G66230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR