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53-3034-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19685317 [Map]; Strand: w
      • AT5G48560.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3034-1 - 5-prime edge 
    ATAGTCACAG CCTCGCCGAA CGAGTAATTA TTTCTCTTTA CTCTCCACTT 
    CTCCTAAAAT CTTACATAGT AAAGTTGACC TCAATTATCC AGAGTTTGTT 
    AAACTCCGGA TAAAATTGGC AAAATATTCC TTAGATTCGG TTAAACTTTA 
    AACCAAAATT TCGAGGGAGC CGGACTAATG TATGAGTTGG AACACTAGTT 
    GCGAGGCAAA ATAAATGCTA AGAAATTTAT AGGTTTTGGC ACGAAGAAAT 
    GTATAGGTTT CGGCCCAAAA CTTATCGGAT ATGAAGATAA AACAAAATAT 
    AATCACATTT AGTGAATTCT TGATGACNTT GCAAGTTCAA TGATCTAGTT 
    TAATTTTGAT CAGTACTGTT TTTTTTAGTA ATAAGGGGAT AAATTAAACC 
    TTTATTAGTT GTGTTAATTG AATTTGGGTT TG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19685194 [Map]; Strand: w
      • AT5G48560.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3034-1 - 3-prime edge 
    ATAGTGGCTT GGCCTCGTCG AGCTCGAACA TGAATGTAAT CTTTAGGAGG 
    CTCAGGTGGT TTTGTGTTAT TGCTTTTGTT CCCTTCACCT TCTCCTTCTT 
    CTTCTTCATC ATCTTCTTCT TCTCTCTCGA C

AT5G48560.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR