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53-3044-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23814517 [Map]; Strand: w
      • AT5G58980.1 - [+] show detail - Neutral/alkaline non-lysosomal ceramidase
        Distance: 0; Region: intron1 (5UTR)
      • AT5G58990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -476; Region: promoter
    Flanking Genome Sequence: 53-3044-1 - 5-prime edge 
    GNNNNAAAAA AANCAAAATC GGTTTTCGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT NAATATAATN CACCCTGANN AAGAANTANC 
    GCTCNCCTNA NTGATTCTAC GNTGANGAAC ACACTAACCA TTTGCTGGAG 
    NNGATAGAAA CTAATTGATG TGAACGATGN GAAGCAAAAA AAAAGAAGTN 
    GAGAGAAATT CAAATAGACA ANNACTCAAT AAAGTTTCGT TNTTTTTTTN 
    GGGNACCNCC GCNTAANAGT TNGTNGGNAA AAGTAACNGG GNNGGGAANG 
    NCNTNNTNTT TAAGGNGGGG GAGAANAAAA NNTCCCCANT TTNNGCNNTT 
    TNANGGNNTC GNGCCTTNCN ATTTGGGNTT TCCTCGCTTA TCCGNTTTNT 
    ANTTCCAAAG TTTNGNATTT TGGGGGNAAN GTTACGTTAA ANGGCATCCG 
    CGANCGGGGG TNTNAANGAA AANNCTNACA AAAGTNGATT NGGGNTNNNT 
    TTGNGANTAA ACNNAAANTG GNGGGNTTCN NNNTGNNNNA ACNCGAGGGN 
    GGNGGTTTTT GGNNCNGGGG GCGGAAGNGT TTTGNANGAN AGNCATCCCC 
    TNGGGNGATN ACTNTTNGTA ANAAANANCT NNTNTNGGCC NNAAANCGNG 
    GGGGGTTTTN NAANTCCGNC CNTACGTTCC NTAGNNANCC TNTTTGANGN 
    CCCGGGGGGN GNNTGTNTTG TNCGGGGTAG GGAAANANNC GANCCCTCGT 
    TTCCGATNTN GACCTTNCCN GAACAAAGNA NACAAANTTN NGTNNAGNGN 
    GGNTNNNAAA TTAANNNAAA NGNGGAAAAA NGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23814473 [Map]; Strand: w
      • AT5G58980.1 - [+] show detail - Neutral/alkaline non-lysosomal ceramidase
        Distance: 0; Region: intron1 (5UTR)
      • AT5G58990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -520; Region: promoter
    Flanking Genome Sequence: 53-3044-1 - 3-prime edge 
    ATTATATTTT GGGTTTAATA ATTTTAGATT CATGAAATAT GTGTGTTTGT 
    TTGTGTTGCT TACGTTTGTA TTATTCTCTA GGAAGGACTA GAAATGAGAA 
    AGAATTGATT ACTCCGTATT GAGTGTGAAG ATGACGAGGT GGTCTATGTC 
    TATGCACCTG CACATTGTTC TTGCTATTTC TGTTGAGGAT TAAATGTGTA 
    TTCTCAGATT CCGATTATTT GATCGGNCTT GGAAGCTATG ACATAACGGG 
    ACCTGCA

AT5G58980.1

Model type
Protein coding
Short Description
Neutral/alkaline non-lysosomal ceramidase
Computational Description
Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT1G07380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58990.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR