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53-3047-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24378906 [Map]; Strand: w
      • AT5G60660.1 - [+] show detail - plasma membrane intrinsic protein 2;4
        Distance: -1917; Region: intergenic
      • AT5G60670.1 - [+] show detail - Ribosomal protein L11 family protein
        Distance: 2004; Region: intergenic
    Flanking Genome Sequence: 53-3047-1 - 5-prime edge 
    GNAAAAGCAT GTNTATAGGT GATACGTTAC AAAGTNTCAT TAANAAAAGA 
    TTTAGACCTT ATTTATAATA TTCNGTGTCA CNTAACGTAN ATATATNNTT 
    TTTTAATTTC NGATANATGT GACCANTTAG GAGAAGCCAC GNTCAGATGA 
    TACTGGTATC ACAAATATCA CCCNGATTGA TACTAATCAA CCTCATTCTA 
    ATTATTTTAG TAATATAAAA ATAATTTTTG GACTTGTGAT ACTCTAGAAA 
    TATCACCAAT GTACATGGTC TAACCCTTCC AATNATTCAA TTAGCCTTGG 
    ACTTACATGC TTGATGCATT GCATATAATA TGTTATCAAA CTGTAATTAC 
    ATGAATATTA ATATAGTGNC GGTGAGAGAT CGCATATCAA GANATGCATC 
    CATGTGACTA TGGTTAATGC ATTTCNGGGT TAGAGNTCTA ATAACATGAT 
    AAGTGAAANT NNCAGNAGCT TATACTTTAT AAGCGTGTNT TTGACNATCA 
    TACCAANTAC TTATTTATNG TTTNTTNCCA NTTTNCTTGT CNTNNATTCG 
    GGAANATCNT TTTNGCAGNA TTTNTTTTTG GGNGCCNAAA GAACNNTGTT 
    GTCNNTNANA CCAGANTNCC NGGGGCCCCG NGTCANTNGG CANGAGNGNA 
    ANTGGNTGTN GCCCTCNNAG AAATGTTTNT TGNCANCCNN NNAGTTNCCC 
    NNCNNNGTTN NGGGCCCCCN NNNCGCNANT AAANGGNAAC AACNAGNANA 
    A

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24378798 [Map]; Strand: w
      • AT5G60660.1 - [+] show detail - plasma membrane intrinsic protein 2;4
        Distance: -1809; Region: intergenic
      • AT5G60670.1 - [+] show detail - Ribosomal protein L11 family protein
        Distance: 2112; Region: intergenic
    Flanking Genome Sequence: 53-3047-1 - 3-prime edge 
    GCTTTTAAGA CTTAGGAGCA ATTACGTGGA CAGAAAGGTT TGCCTGGCAA 
    AGACAACATA TAATAAGAGC TCCAACGTTG TTCGCATGTC AAGAATCTCA 
    TTCTTATCAT CTCCTCCTCA TTATTTTTCT TTTCCTTATT ATTATTATTA 
    AATCCAACTT CTTAGTTTTG ACTTTCTATA ATTGGTGGGT TATTTTGAGA 
    TTTTGTTACT TTGCTCATTT AAGAAAAAAG TCACTTGTAT ACTGTNTTTT 
    TCATATATAT ATAGTNAGAG ACCAAACTTT ATTTGCCNNA CCATTTTATA 
    GATATATCAA TTTCTANCTA CGTATGATTG ATACTGAATC AGTTCTCTTT 
    AANTTTGNCN GACCCCCCAC CCNGAAAATG ANNNTNAAGC NTNGGAATTA 
    TGTGTNCNGT TNAAACGCGC GGGCTNNTTN NNNCTNCGNN NCAAAGNTNC 
    TTTAAGNTTT ANATGTCCAC CNCCCGNCAN TTNNNTGTNT AATAAAGTAN 
    GNNNNTCCAN GGGGNNGGGG GACNNACCNN ANTAAAAAAT TTNNANNNGC 
    NNNGGGGGNT ACANAAAAAA AAAAAAAANT TGGGNNGNCC NNNAGNNNGA 
    AGGATTTTTT TTTTTTTTTT AAANACANGG GCCCCNACCT AAAAATNATT 
    TNTTTNNNGG GGNGGGGGGG AATAAAAAAG AGGCGGGTCA AAACCCNTTT 
    NTGAANAAAA AATNTTATTN TTTTTGNGG

AT5G60660.1

Model type
Protein coding
Short Description
plasma membrane intrinsic protein 2;4
Curator Summary
A member of the plasma membrane intrinsic protein subfamily PIP2.When expressed in yeast cells can conduct hydrogen peroxide into those cells.
Computational Description
plasma membrane intrinsic protein 2;4 (PIP2;4); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, hydrogen peroxide transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 2 (TAIR:AT2G37170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60670.1

Model type
Protein coding
Short Description
Ribosomal protein L11 family protein
Computational Description
Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT3G53430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR