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Mutant Lines
53-3050-1

53-3050-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 2; Position: 1860965 [Map]; Strand: c
- AT2G05160.1 - [+] show detail - CCCH-type zinc fingerfamily protein with RNA-binding domain
  Distance: 0; Region: intron2 (5UTR)

TATGATATAA GAGTTTTGAC TAAATCTTTT GGAATTAACA ATAATGAAAG 
TTTTGCTTTG CAGAGAAGTT TTTAAGATAA GAAGTTTTTT TAGAGATGAA 
TTTCACAGAA TCAATGAACG TTGTGCACGC CAGAATCCAA CAACNTTGAA 
CCAGAGAATG CAGCAAAGAT CTTTGGTTAT CTCTTGTTGA TGCAAGAAAA 
TGGCAACCGC GACATGATCC GTCTCGCGTT CTGTCCTGAT TCTGTTATGT 
GTTCTGTCAT CAATTGCGTT AAATACGAGT TAGCTAGGAA TTCTCATCAT 
TACCACAGCC CTCCTTCTGA TCACATTCCT ACTCCCAAAT TTGGATCATT 
CACCGGTTCA TCGCCTCTTT CGGTTTCGGT TTCTCCTCCC ATGAAAACCG 
GTTTTGGGGA GAATTCAACC GAGATGGATA CCTTGCAGAA CAATCTTCAG 
TTCTTGAATT TTGAGGATTC TTTGACCAGC CCTGAATTCT CTAATGGTTT 
CTT

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 2345554 [Map]; Strand: w
  - AT2G06020.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 0; Region: intron3 (CDS)
Flanking Genome Sequence: 53-3050-1 - 3-prime edge
```
ACTTTGATTG TCGTTGAACT GTAGATTTCC TTGAGTTGGA TGTATTGATG 
CCTCATACAT TGGAAATGTA TTCCTTGCGT TTAACTCACT CAATGAAAGA 
CAAGCCATAC CGTCGGTGCA AAAATCTTCG ACAGAAGTGG NATTTTGTGG 
AATGGNGATA GATGGTTG
```

AT2G05160.1

Model type: Protein coding
Short Description: CCCH-type zinc fingerfamily protein with RNA-binding domain
Computational Description: CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G06020.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G13640.2); Has 1600 Blast hits to 1597 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1585; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link: InterPro Scan - TAIR