1. Home
  2. Mutant Lines
  3. 53-3080-1

53-3080-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23543613 [Map]; Strand: c
      • AT5G58170.1 - [+] show detail - SHV3-like 5
        Distance: -268; Region: promoter
      • AT5G58180.1 - [+] show detail - Synaptobrevin family protein
        Distance: -398; Region: promoter
      • AT5G58180.2 - [+] show detail - Synaptobrevin family protein
        Distance: -398; Region: promoter
    Flanking Genome Sequence: 53-3080-1 - 5-prime edge 
    GAGGAGAGTT GAATCGTTGT TGAATTCCAG AGACCTTTTT AGTTAAGGGA 
    CCTTTCAGGG TTAGGCCATA TAGAAAAAAA AAAATTAAAA TTTTATTNAT 
    NAANATAACN AAATTNTTTT TAANATTGGT CCGNGNTNCN TAATTTNTAT 
    NCGGTAAGNG AAAAANGGNG GACNTATTTN AANATATATT TTTTNNATNC 
    CCNAGGGTCT NATTNNNNNA NANAANCCNG GGTTTTANNA AAAGGNGANC 
    NCCCAATAGG GGGGGNGGNG TGNCTNAAAN NGGNGGGGGN GGGGCCCNAN 
    CCCCTTTNNG GGNAAGGNCC NNNNNCTTTA TNAATAAAAA ANAAANAAAA 
    GGTTTTTTTT TTTTTTTGGC CTAACCCNGA ANGGTCCTTT AACNAAAAAN 
    GGTNNNGGGN CTNCAANAAC AATTTAACTC TCCCCCCCCC CNCNNGGNGG 
    GAGGGGAAAA TACNGNCCCC CCCCGNGNNN GGGGGAANCA AANNNGGGGG 
    GGTTTTTTTN NNANCNNCCC CNCCCCCCCA AAANNNCCCC CCNCGGGGGG 
    GGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23543729 [Map]; Strand: c
      • AT5G58170.1 - [+] show detail - SHV3-like 5
        Distance: -384; Region: promoter
      • AT5G58180.1 - [+] show detail - Synaptobrevin family protein
        Distance: -282; Region: promoter
      • AT5G58180.2 - [+] show detail - Synaptobrevin family protein
        Distance: -282; Region: promoter
    Flanking Genome Sequence: 53-3080-1 - 3-prime edge 
    CTCTCCTCTC TGCATCTATA CATCGTATTG TCGATCTCGT CTCATCTGTC 
    TTGTCTACTC TCTGCCCCGG TAACACCTCT CTATCTTGCT TCTTCTCTCT 
    TTAGCTTCTT CTCTGTCTCT TATAACATAT CTGCTCGAAC ACTCTTTATC 
    TCGTCTACTC TCTCCTTGTT GTTTCAAAAG CTATGTTTTT TTTCGAGTTT 
    CTGTCTTATG ATTGTATAGT AACAAAATTA GTCTCTCACC AACTGTGACT 
    TTGTTTTTTT TTNACGTTTT TANCTCATAG TAAAANAAAC TCACNGGAAC 
    TTNATNGGTT CNGTTTNANG ATTCAAAACC CTNGTCATNA AAATNACTGC 
    CTNGCTCGTT CTCAAGNGCN ATCCCNAAAC ACNCNAACCC GTTNTCCNGG 
    CCAACGTTTC CNACCTNTNA NAATTCGGAA AATTCTNTTT TTATCGCTCT 
    AACTTCAAAA AGTNCATNGT ATTCATNGCC CGTNCNGTNG CCAAAAAAAC 
    CCCTCCAGGT NAGNGCCAAT CCGTNAAACA CNAAGGTTCT TNTTNTTTTT 
    TTTGGGCNNT GGNATCNGCC ATATATATGG GNCCNGTTNA TAATTTGGNA 
    ATGGACATCN CNGGGTNGAT NTGTANAGNA TAAAGGGCCC CCTTACAACA 
    TAAANGGCCT NTGCNCCGNA GGATTCATGG ACAACCNTTN TCCCGTNCNA 
    AGGGCCTTTT NTNTTCTNA

AT5G58170.1

Model type
Protein coding
Short Description
SHV3-like 5
Computational Description
SHV3-like 5 (SVL5); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: SHV3-like 4 (TAIR:AT5G58050.1); Has 2139 Blast hits to 1578 proteins in 572 species: Archae - 0; Bacteria - 1688; Metazoa - 15; Fungi - 4; Plants - 324; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58180.1

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of YKT6 Gene Family
Computational Description
ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1); Has 1250 Blast hits to 1250 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 351; Fungi - 294; Plants - 343; Viruses - 0; Other Eukaryotes - 262 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58180.2

Model type
Protein coding
Short Description
Synaptobrevin family protein
Curator Summary
member of YKT6 Gene Family
Computational Description
ATYKT62; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: integral to membrane; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Synaptobrevin (InterPro:IPR001388), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G58060.1).
Link
InterPro Scan - TAIR