Home
Mutant Lines
53-3088-1

53-3088-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17925593 [Map]; Strand: w
- AT4G38220.1 - [+] show detail - Peptidase M20/M25/M40 family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G38220.2 - [+] show detail - Peptidase M20/M25/M40 family protein
  Distance: 0; Region: exon1 (CDS)

CCCACACCGA TGTCGTTCCC TTCGAGGACT CCAAGTGGAC TCACCATCCG 
CTCCAAGCTC ACATGGACCA CCATGGCGAC ATCTATGCCA GGGGTTCCCA 
GGACATGAAG TGCGTCGGGA TGCAGTACCT CGAGGCCATA CGCAAGCTCC 
AGGCTTCTGG CTTCAAGCCA CTCCGATCCG TCTATCTCTC CTTCGTCCCC 
GATGAAGAGA TTGGCGGCCA CGATGGCGCA GAGAAGTTTG CTGAATCCCA 
ATTATTCAAG AGCTTGAACA TCGCAATCGT GCTCGACGAA GGTAAACACT 
CTTCTGGATT TGATTCTTGA TTATAACAGC CAAGCATCAT CTTATACAAC 
AAAGTGAATC AGGCCTGCCA TCGCCTACTG AGAGTTACAG AGTATTCTAT 
GGAGAGAGGA GTCCCTGGTG GCTGGTGATT AAGGCTAAAG GTCCACCTGG 
CCACGGTGCC AAGCTCTATG ACAACTCTGC CATGGAGAAT CTGCTCAAAA 
GCATTGAGAG TATTCGCAGA TTCAGAGCTT TCTCAGTTCG ATCTTCTCAA 
AGCT

3 prime edge [+] show sequence

Chromosome: 4; Position: 17925477 [Map]; Strand: w
- AT4G38220.1 - [+] show detail - Peptidase M20/M25/M40 family protein
  Distance: 0; Region: exon1 (CDS)
- AT4G38220.2 - [+] show detail - Peptidase M20/M25/M40 family protein
  Distance: 0; Region: exon1 (CDS)

GGTGTGGGAG TTGAGGAGAA AGGCAGGTAG GGTTGGGTCG GAGCCAACCC 
ATTTGAGGAG GAGAAGCGGC TTTCCTTTTA CAAATTCGAT CGTCTGAGAT 
TCGAGGGACA GTGGTTTCGC CTGAGATATT ATAAAGTCAA CGGCTTTGTA 
GTATTCCGGG TTGGGCTGAA CCGTGTTGAT TCGGAGGTAC TCCTGGAATC 
TGGAGACGAT GGCGTCGTCG CCGGCCACCG CAGAAAGATG AAGAACAACA 
ACAACGAGGA GAAGACGAAG AAGACTCATT GAATTGGATT CGGATTCTTC 
TGCAACAACA ACAACAACTA CTTCCACTAC AGAGCAGCAA ATGGATTACT 
AAATTGAATT GCTCACAAAA GGGATGAAGA AGGCCACGTG GCAGAAAGGA 
ATGGCAGTTT GGTGAATAAA TGAAATAACA AGGGCAAAAG AAAGAAAAAC 
CAAACTAATT GTAACCATAA TCCCTACACT CACTCACTTG TGGATCTCGA 
GAGAGATGAT GGAGGAGTGC AGTATGAGGA AACTGGCCTT GTGGCACACG 
AGAACCTTCA AGCCTGTTAT GACGCACGAG GAGCTTGAAC CAATCATGTC 
CACCATGGGC TTCGTCGCTC AGGCCACCGG AGCAGGAGGA GGATTCAAAG 
AGTACGTTTT CCTCTCTTNT TCCACCACCA CCACCACCAG GCCCAGGCTG 
CCCTATCCCC ACATCGACGG NCTTCAT

AT4G38220.1

Model type: Protein coding
Short Description: Peptidase M20/M25/M40 family protein
Computational Description: Peptidase M20/M25/M40 family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7635 Blast hits to 7629 proteins in 1864 species: Archae - 183; Bacteria - 5555; Metazoa - 388; Fungi - 290; Plants - 78; Viruses - 2; Other Eukaryotes - 1139 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38220.2

Model type: Protein coding
Short Description: Peptidase M20/M25/M40 family protein
Computational Description: Peptidase M20/M25/M40 family protein; FUNCTIONS IN: hydrolase activity, metallopeptidase activity, aminoacylase activity; INVOLVED IN: response to zinc ion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 7219 Blast hits to 7215 proteins in 1775 species: Archae - 179; Bacteria - 5225; Metazoa - 384; Fungi - 290; Plants - 80; Viruses - 2; Other Eukaryotes - 1059 (source: NCBI BLink).
Link: InterPro Scan - TAIR