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53-3114-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055381 [Map]; Strand: c
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3114-1 - 5-prime edge 
    AAATGTAATT GCTTTCACGT TCGGAAAACC AATAAGATCC CGTGATTCAT 
    TAAGTCGATA GAGGACATGA ATAACGTGTC TATAACTCCA AACAAACAAA 
    AAAGACGCAA TAGAGGCTGC CATATGCATG TAATAAATGG GGGTAAAAGA 
    AAATGATATT ACCCTGCCAT ATGCATTGTA ATCGAGGCTG TTCTTGAGAA 
    GATCGACAAT GTCGTTCTTG AGATATTTGC AAACCGAGTT TTTCTTCCTC 
    TTCACCGTGT CTACTCTTGT CTTCGTTATC TTGACCAACG ACTTGCTGAG 
    AAATATAATT AAAAACAATC AACGAATGAA ACCAGGAAAA CGGAAAATAA 
    GCAGAGACTT ACCATTTCGT ATAAAACTTG GGTTTGAACA GCCCATCAAA 
    CATTTTGCCT TACGAAAAAA AAACAGACAA GGTTGGCTTC TTCTTCTTCT 
    TCTTTTTGTT TTTTTGTTTT GTTGTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30055462 [Map]; Strand: c
      • AT1G79910.1 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
      • AT1G79910.2 - [+] show detail - Regulator of Vps4 activity in the MVB pathway protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3114-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAG 
    AATGATTATT TTTTCTTTTG TTTTTCTTTT CTGAAAGAGG GTCAACGTAC 
    GATGGTTTCG GTAAATCTTT GTTAATTGGT TCTATTTTGG GTATAGATGG 
    AAGCAATGCA AAAAAAAAGA AATAGATATA TTTCATTCTG ATGCNTGTCA 
    CCAGCCTGGT TATAACAGAG TGAATTGTTG CTTAAGAAAT TCTTGGCCCC 
    TGTTTTAAGT TATAAGTCAC ATGAGTAAGT ACATAGAGAG ATGGTTCTGA 
    TGGCATGTGT TTGTGTGACA GGCAGAAGGG CTTATAGAGG AGAAAAGGAG 
    GCTGGCTTGT TATGAGTTTT TGGAGCAATT CTGCAACTGT GTTGCATCCA 
    ATGTCTCTCT ATTACAGAAA TCCATGTAAA AACTAACCCT AAACTTGTTT 
    AATTTACTTG CATGGATTCC ATTCATCTAA ATAAATATTG GGTTTTGCTT 
    GAGCAGCCGG TGCCCTGATG AGTGCCGCGA GGCCATCTCC TCCCTTGTAT 
    ATGCAGCCGC TAGAGTCTCT GAAGTCCCTG AGCTACGCGA CCTCANATCT 
    TTATTTGCTG AGAGATACGG AAACACACTT GATCAGTTTG TGAACCCCTG 
    AGGTATTTAT TCTTTGTTGA CTATATTTTT TTATATGCTC TGCCACTTGG 
    TCGCTGACTC CACGGAGGAA TGTTGCAGTT TGTAGAGAGA TTCAAAGCAN 
    AGCCGCC

AT1G79910.1

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G32350.1); Has 592 Blast hits to 592 proteins in 162 species: Archae - 0; Bacteria - 3; Metazoa - 147; Fungi - 112; Plants - 281; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79910.2

Model type
Protein coding
Short Description
Regulator of Vps4 activity in the MVB pathway protein
Computational Description
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT1G52315.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR