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53-3119-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4887931 [Map]; Strand: c
      • AT3G14550.1 - [+] show detail - geranylgeranyl pyrophosphate synthase 3
        Distance: -1949; Region: intergenic
      • AT3G14560.1 - [+] show detail - unknown protein; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bac...
        Distance: -1141; Region: intergenic
    Flanking Genome Sequence: 53-3119-1 - 5-prime edge 
    TCTACACCTC TCTTTTGCTC TTCTTTAATC TTCTCCAATT ATTCTCCAAT 
    ATATTTGTCG GATTACCTCC TAGAGTCCTA TACTATATTT GACAAAAAAA 
    CTTTTTAGTT TTTAATGTTG ATATGGTGTC AAAAATTATA TCGGAAATTA 
    TTTTATGGGT TATATCATAT ATAGTGATCT AATAGAACAT GGTTTTTGAT 
    TCTTAAAACT AAAAGTATAC GGAGTTTATG GTAAAGTCGT CTTGTAAACA 
    TTTACAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4888058 [Map]; Strand: c
      • AT3G14550.1 - [+] show detail - geranylgeranyl pyrophosphate synthase 3
        Distance: -2076; Region: intergenic
      • AT3G14560.1 - [+] show detail - unknown protein; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bac...
        Distance: -1014; Region: intergenic
    Flanking Genome Sequence: 53-3119-1 - 3-prime edge 
    CTCAACCGAG CGATAATTGA TGCGACGAAG AAGGAGTGGG TCGGTCCACT 
    ATAAGAACCA CCACTCGTGC TAAACGCTAT GATGCTTCGA ATTGGATCTC 
    ATTTATTCGG TCAAATCATT TCTTCTCACT CGACGA

AT3G14550.1

Model type
Protein coding
Short Description
geranylgeranyl pyrophosphate synthase 3
Curator Summary
Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.
Computational Description
geranylgeranyl pyrophosphate synthase 3 (GGPS3); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT3G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14560.1

Model type
Protein coding
Computational Description
unknown protein; Has 6 Blast hits to 6 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR