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Mutant Lines
53-3123-1

53-3123-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24146600 [Map]; Strand: w
- AT5G59970.1 - [+] show detail - Histone superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT5G59980.1 - [+] show detail - Polymerase/histidinol phosphatase-like
  Distance: -607; Region: promoter
- AT5G59980.2 - [+] show detail - Polymerase/histidinol phosphatase-like
  Distance: -607; Region: promoter

CTTGACTCCA CCTCTACGAG CCAATCTTCG AATCGCAGGC TTGGTGATTC 
CTTGGATGTT GTCTCTCAGA ACCTTCCTGT GACGCTTGGC TCCTCCTTTA 
CCCAAACCTT TTCCTCCCTT TCCACGACCA GACATTTTCT CGAGAGAATT 
AGATTTCTTT TTTTCGCTAC CTGTGTGAAG AAGAATTGCT TTTGATTTTC 
AGATATTGAC TGGACCGTGT TTGTTTATAT ATAAGAGGGC TTTTGTTTTC 
AACCATCCGA TTTAATAACC CATCTAACGG CTGTTAAGCT CAATCCTTGT 
CAATACTGAT ATGACATGAT AGCCGTCGAT TGATTTTAAT CAACGGTTAT 
TAATTGTGAT CCGCATGATA ACTACATAAG TGTTCTTCAG CTTCGCTTTG 
TAGTTACTAG TTTTCATGGG CTGGCTTACT TTTTAATGGG CCGGTTATGG 
ATCGAAACCA AACTTCTCTT ATTTTCGAAT ACGCAGTCGT TTCGATAACT 
GCCTCATACG TCGTCGGCTG CATAGTAAAA T

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 24146484 [Map]; Strand: w
  - AT5G59970.1 - [+] show detail - Histone superfamily protein
    Distance: 0; Region: exon1 (CDS)
  - AT5G59980.1 - [+] show detail - Polymerase/histidinol phosphatase-like
    Distance: -723; Region: promoter
  - AT5G59980.2 - [+] show detail - Polymerase/histidinol phosphatase-like
    Distance: -723; Region: promoter
Flanking Genome Sequence: 53-3123-1 - 3-prime edge
```
GAGTCAAGCG TATCAGTGGT CTCATCTACG AGGAGACACG TGGCAGTCCT 
CAAGATCTTT CTCGAGAACG TAATTCGTGA TGCTGTCACT TACACCGAGC 
ACGCTAGGAG GAAGACTGTG ACCGCCATGG ATGTTGTCTA CGCTCTCAAG 
AGGCAAGGAA GGACTCTCTA CGGATTCGGC GGTTAATTAG GGTTTTTCAG 
ATTCGCG
```

AT5G59970.1

Model type: Protein coding
Short Description: Histone superfamily protein
Computational Description: Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59980.1

Model type: Protein coding
Short Description: Polymerase/histidinol phosphatase-like
Computational Description: Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 397 Blast hits to 397 proteins in 185 species: Archae - 13; Bacteria - 5; Metazoa - 139; Fungi - 139; Plants - 45; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59980.2

Model type: Protein coding
Short Description: Polymerase/histidinol phosphatase-like
Computational Description: Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 1908 Blast hits to 1535 proteins in 339 species: Archae - 16; Bacteria - 381; Metazoa - 491; Fungi - 307; Plants - 100; Viruses - 13; Other Eukaryotes - 600 (source: NCBI BLink).
Link: InterPro Scan - TAIR