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53-3126-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30409615 [Map]; Strand: c
      • AT1G80930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3126-1 - 5-prime edge 
    CACAGATTTT TGTTTCGCCA GTCTATCACA CTTTTGCTCG CCGATTTTCC 
    AGATCTCAGT AGGGTTCTTG CTACAGGTTT CAGATCTTTG GATAGGCCTT 
    GGTGGATTTT TATCTATCAA TCGATAAAAG GTTTTTACCT TTTACTCTGT 
    AAATCGTAGT TTGGGTTGTT TGTACTATTT TCTCATCCAT GGGTAGGCAC 
    GGTAGTTCCT CCGACGAAGA AGAGAGAGTT AGAAGAAGGG ATAGGAGAAG 
    ACGAGAGAGA AGCCCTGATG TTAGAAGATC GAGGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30409733 [Map]; Strand: c
      • AT1G80930.1 - [+] show detail - MIF4G domain-containing protein / MA3 domain-containing protein
        Distance: -23; Region: promoter
      • AT1G80940.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -968; Region: promoter
      • AT1G80940.2 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -968; Region: promoter
    Flanking Genome Sequence: 53-3126-1 - 3-prime edge 
    TCTGTGTCGA TTTGGGTTTT TGTTGTAGAT GGCGCTCTTT CGCCGACACG 
    ATGTCCTCTT ATCGATGCTC AAAACGGCAC AATGTCTATA TGCTTATAAT 
    TTTAATTCCA AGGAGACATA AGGCCCAATG GGTCAAGGCC ATTTCTTCAG 
    TCACTGTATC TCTTCCAATC ATACTTTTCA GACTAAAATC TGCTAACTAT 
    T

AT1G80930.1

Model type
Protein coding
Short Description
MIF4G domain-containing protein / MA3 domain-containing protein
Computational Description
MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma, MA3 (TAIR:AT1G52325.1); Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86; Bacteria - 5039; Metazoa - 22313; Fungi - 6500; Plants - 3817; Viruses - 357; Other Eukaryotes - 13564 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80940.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80940.2

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR