Home
Mutant Lines
53-3140-1

53-3140-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 23402123 [Map]; Strand: c
  - AT3G63360.1 - [+] show detail - defensin-related
    Distance: -532; Region: promoter
  - AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 53-3140-1 - 5-prime edge
```
GGCAGGATAG CTCTGTCGGA ATACTACAAT GCAGACGAAC CCTTGGAAAC 
GAAATCGCCG AAGCAGAGTA CATCATGTTA CTCAGTAGTC TCATGTTAGT 
TACCGCGTAT TCCATTTATG TAGCCATTGT CCAATCATCA TCATCATCGG 
TAAACCATTG GTGTTCGTGT TTCCGAATTA TCTCTCTCGT TTTTTTCTTT 
TTCGGGTCAA GCT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 23402197 [Map]; Strand: c
- AT3G63360.1 - [+] show detail - defensin-related
  Distance: -606; Region: promoter
- AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
  Distance: 0; Region: exon1 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
GGAGAAACCC ATTCCGACAG AGCAATCAGC CCGTCCAAGT CCCTTCTCCG 
AAGCTCGCTT GTTTCGACGG AGTCCTAACT GAAGATTTTC AACGGCTGGA 
CGTCAGCGAA AACAACCTCT CCAGTCGAAG CCTTTGCCTA CGTTCTCGAG 
CTTTGTGGTA AACGTAGAGC TGTCTCACAA GGTCGGCAGC TGCATTCGCG 
CATTTTCAAG ACTTTCCCCT CTTTCGAATT AGATTTTTTG GCCGGCAAGC 
T

AT3G63360.1

Model type: Protein coding
Short Description: defensin-related
Curator Summary: Encodes a defensin-like (DEFL) family protein.
Computational Description: defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63370.1

Model type: Protein coding
Short Description: Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary: Encodes a chloroplast RNA editing factor.
Computational Description: ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link: InterPro Scan - TAIR