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53-3154-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30082330 [Map]; Strand: w
      • AT1G79970.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (5UTR)
      • AT1G79970.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 53-3154-1 - 5-prime edge 
    GTGCATTTGG GGGCTTTCCT CTTATCTGGA AACAAAGAGA GCCGCCACTG 
    ATGGTAAATT TGCTTTTCAT CCTTAACCTC TCTACTTCTT CTTCTTCTTC 
    TTCTTCTTCT TCTTCTTCTA CTACCACTAC NTTTTTGAGA TTCTATCTAT 
    CTATAGTCAT CCATTTTGAC TAGGAGACTT TATATTATTT TCTTCATTNG 
    AAAGATTCTC TATACATAGA TAGTCATCGA TTGTGTTNCT GTGTGTGTCT 
    GCAATATCTG TAGTTTTGAT TTGAAACTTG CCTGAATCAA ATCCAACCAT 
    GAATTCGGTA GTTTTGTAGA TCAGAGATTA TTGGTAGAGA GTATCAATGT 
    TGGATTGATT GATTGAATGA AG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 337558 [Map]; Strand: c
      • AT2G01770.1 - [+] show detail - vacuolar iron transporter 1
        Distance: -1120; Region: intergenic
      • AT2G01780.1 - [+] show detail - Curculin-like (mannose-binding) lectin family protein
        Distance: 466; Region: intergenic
    Flanking Genome Sequence: 53-3154-1 - 3-prime edge 
    TATGCAACGC TCCAATTCAC ACACTTTCAT GTTTTTCATC TTTAACTTCT 
    GTGACCATTT ATCAGATTAT TAGAAACATT CAAAGTCTCA TTTGACACAT 
    AACATATAAC GAGAATGTTA TATCATCAGC AAATTCCCAA TGTTCACACN 
    GGTTACAAAA TAGTTACAGT TGGGTAAATG TCATCTTCAT TTTCTATATA 
    ATTAAGTATT AGATTGATCC ATTTAAAAAC TTTAGTTTAG CTAATTAAAA 
    TACAAAACCA AAAATATAAT TAAGAAACTA ATCTGATGTT TTATAATTTG 
    ATATAAGTAC TTCCAAAAAC TATCAACTAA TTTGGTTGTT GATGTTTTCA 
    TTCTTGGAAT AAGATAAGGA ATTTTTTAAG ATTAAAGTAA AAAATATTAT 
    TACTTTTGAT ATGTAATTAA ATTAAATGCG TTGGACACTT TTTGGATACA 
    TAATTGGTTT TTTTTTTT

AT1G79970.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79970.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01770.1

Model type
Protein coding
Short Description
vacuolar iron transporter 1
Curator Summary
Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.
Computational Description
vacuolar iron transporter 1 (VIT1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); Has 1947 Blast hits to 1945 proteins in 688 species: Archae - 106; Bacteria - 1196; Metazoa - 0; Fungi - 163; Plants - 191; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01780.1

Model type
Protein coding
Short Description
Curculin-like (mannose-binding) lectin family protein
Computational Description
Curculin-like (mannose-binding) lectin family protein; FUNCTIONS IN: sugar binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480); BEST Arabidopsis thaliana protein match is: receptor kinase 3 (TAIR:AT4G21380.1); Has 1787 Blast hits to 1759 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1787; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR