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Mutant Lines
53-3160-1

53-3160-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 6893783 [Map]; Strand: c
- AT5G20390.1 - [+] show detail - Glycosyl hydrolase superfamily protein
  Distance: 0; Region: exon2 (CDS)

AAGTCCTTAA GTGTTACCAA TATTCATGAT CTTTGACNCA ACTACGGATG 
TCCTTAACGC CTTTCGAGGG AATCGCAATA TCGGAGTTAT GGTAGGCGTG 
AAGAACCAAG ACTTAGAGGC TCTTTCGGTC AGCGAAGAAG CTGTTAACAC 
CTGGTTCGTG ACCAACATTG AGCCTTACTT AGCTGACGTG AACATCACGT 
ACATTGCTGT CGGGAACGAA GTCATCCCAG GGGAAATCGG CTCTTATGTG 
CTACCCGTCA TGAAATCTCT CACCAACGTT GTTAAGTCGA GGAGNCTCCC 
GATCTTGATC AGCACCACGG NGGCTATGAC CAACCTTGAC CAGNCGTATC 
CACCTTCGGC CGGAGATTTN ATACCTCAAG CGCGTGAACA ACTTACCCCG 
GTGCTGAA

3 prime edge [+] show sequence

Chromosome: 5; Position: 6893904 [Map]; Strand: c
- AT5G20390.1 - [+] show detail - Glycosyl hydrolase superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT5G20400.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  Distance: -940; Region: promoter

GTTGTAGAGG TTGATAACTT CAGATGGAGG CGGGAGGTTG TCTCCAAGGA 
GGCCGTAGTT CAAGCCAATG TTTGTTGCTG CGTCTACAAA GCCAACATTG 
CTGTAGTTTA ACAGAAATGC CACGCACAAA AACTTCAACA AGAACNGTCT 
TTCTATGACA ATCCATAATT AAAGGCGTGC CTGCAAAATA GAGGATAAAT 
TTAATATTTT AGTTTCAAAT CTTATACAAG TTTTTTTTGT ATGTATGTCT 
ATATAGAGAC AGCAGATGAT CATACTTGTA TGAAGAACGG GTACGAGGGA 
AGCAAACCAA AGATGTTTGA TGTTTCTCTT CTTTTCTTAT TCGTTGCAAA 
ACAAAAGATT GTAGATGCAT GCAATTTATA TCCATAGTTG AGATATGCTT 
TCTATTTTAT TAGTACCACT AAAATAGTAA TTTTTTTTGT TATAGTTAAA 
CTT

AT5G20390.1

Model type: Protein coding
Short Description: Glycosyl hydrolase superfamily protein
Computational Description: Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2108 Blast hits to 2093 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 2096; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G20400.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary: encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G49390.1); Has 8498 Blast hits to 8450 proteins in 980 species: Archae - 0; Bacteria - 1051; Metazoa - 121; Fungi - 1005; Plants - 4926; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).
Link: InterPro Scan - TAIR