1. Home
  2. Mutant Lines
  3. 53-3207-1

53-3207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25796513 [Map]; Strand: c
      • AT5G64530.1 - [+] show detail - xylem NAC domain 1
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3207-1 - 5-prime edge 
    CATATCACCC ACTTGCTATA ATCCTGCACA CAAAAATCCA TGCCACGTGG 
    AGGTCAACTT CTAAATTTTT ATTTTATTTT TGTCAACTAC TAATTTTAGG 
    TTAAAAGAAA ATGTACAATT TAAGTTAAAG CTGACAACTT TAGGCTTATG 
    AAACAAAAGA GAGTACTCAC GGGTTTGTGA CTAGAACTAG AAGCACGGCT 
    TGATCTCTTA GAAGATCGAC TAGATGAAGA AGAGGAATCC GGGAGGGAAT 
    ATTCTTGCAT GATCCAATTA GTCTGAGAAT CTCCGAGATA GAAAGTTAGA 
    TACTTTTTGA TTCCCACTTT CTTGTGTGTG GAGCTTGTGT AGATTGGCTC 
    GTCCATTCCC ATTGATCCCC AATACCCATT GCTTGTCACT CTCTCTTGTG 
    TCTTTCTACT ATAGAAGTAC CATTGCCTCC CTTCTCCCAA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25796629 [Map]; Strand: c
      • AT5G64530.1 - [+] show detail - xylem NAC domain 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3207-1 - 3-prime edge 
    GTGATATGCA GAGTGTATGA GCAAAATTGC AGTGAGGAGG AAGACGATGA 
    TGGGACAGAA CTCTCATGTT TGGATGAAGT GTTTTTGTCT TTAGATGATC 
    TTGACGAAGT AAGCTTCCAT ACCGNNCCCT AAACCACNCT NNCNCTATGG 
    CTTNGNNTTT AATNNGANNG AAACCNTATT CCGGNTTCTA ACANCGNGAT 
    GCGGTGGATG ATCTTNTACT CCCTCTTACT CGTTGACTTC ATNCTCNNTA 
    CACTATNTCC ATAGCCNTAT CCAGGNGCTN TGTCTACCTT TNTGAAANCT 
    TACCACCCNG GCCCGCNACC ACCCCNNNCC CTNTNANCTT NNATNTTNNT 
    TTGNNNCNNA NGNNGAANAC TNNNNNTCNN NATNCTNNNN CCCTANATNC 
    CTTNNCNNNN NGGCNATNGA NANCTCNNNN NATNNNATNC NCCNNCTCNA 
    NGNC

AT5G64530.1

Model type
Protein coding
Short Description
xylem NAC domain 1
Computational Description
xylem NAC domain 1 (XND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 25 (TAIR:AT1G61110.1); Has 2741 Blast hits to 2738 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2741; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR