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53-3216-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24050969 [Map]; Strand: w
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: -583; Region: promoter
    Flanking Genome Sequence: 53-3216-1 - 5-prime edge 
    CCGGTTGGTA ATTATTTTTG TTAATGTGAT TTTAAAACCT CTTATGTAAA 
    TAGTTACTTT ATCTATTGAA GTGTGTTCTT GTGGTCTATA GTTTCTCAAA 
    GGGAAATTAA AATGTTGACA TCCCATTTAC AATTGATAAC TTGGTATACA 
    CAAACTTTGT AAATTTGGTG ATATTTATGG TCGAAAGAAG GCAATACCCA 
    TTGTATGTTC CAATATCAAT ATCAATACGA TAACTTGATA ATACTAACAT 
    ATGATTGTCA TTGTTTTTCC AGTATCAATA TACATTAAGC TACTACAAAA 
    TTAGTATAAA TCACTATGTT ATAAATCTTT TTCGGTTGTA ACTTGTAATT 
    CGTGGGTTTT TAAAATAAAA GCATGTGAAA ATTTTCAAAT AATGTGATGG 
    CGCAATTTTA TTTTCCGAGT TCCAAAATAT TGCCGCTTCA TTACCCTAAT 
    TTGTGGCGCC ACATGTAAAA CAAAAGACGA TTCTTAGTGG CTATCACTGC 
    CATCACGCGG ATCACTAATA TGAACCGTCG ATTAAAACAG ATCGACGGTT 
    TATACATCAT TTTATTGTAC ACACGGATCG ATATCTCAGC CGTTAGATCT 
    ATTATGCGAT CTGATTGCTC AAAAATAGAC TCTNCGTCTT TGCCTATAAA 
    AACAATTTCA CATCTTTCTC ACCCAAATCT ACTCTGAACC GGTCTTCTTC 
    TTCTACTAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24050850 [Map]; Strand: w
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: -702; Region: promoter
    Flanking Genome Sequence: 53-3216-1 - 3-prime edge 
    ACCGGCACTC ACAAATACAA ACAGAGCACA CTGACATGTC AAAGCCACAA 
    GTAAATTCGT TGAGTGGTGG TTTCATTACA ATTGTGTCAC TTGCAGCACA 
    AACTATCTTG CTCTGGGAAT CATCTCAGCA TCAAAGATCA TGCTCACTTC 
    AGGGGAACTT TAGTGTATNC ATGCCTNGAC TCATATTTCT GCTGGAGTTT 
    TCAGAC

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR