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53-3230-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24051961 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-3230-1 - 5-prime edge 
    AATACAAAAG TAAAACGCAN ACGCTTAAGT GAGAAACCCA NAAAACACAA 
    ACGCGGATCT GAAAAACTCT AATTAACCAC CGAATCCGTA AAGAGTCCTT 
    CCTTGCCTCT TGAGAGCGTA GACAACATCC ATGGCGGTCA CAGTTTTCCT 
    CCTAGCGTGC TCGGTGTAAG TGACAGCATC ACGAATCACG TTCTCGAGAA 
    AGATCTTGAG AACGCCACGA GTCTCTTCGT AAATCAAACC ACTGATACGC 
    TTGACTCCAC CTCTACGAGC CAATCTTCGG ATCGCAGGCT TGGTGATTCC 
    TTGGATGTTG TCTCTCAGAA CCTTCCTGTG ACGCTTGGCT CCTCCTTTAC 
    CCAAACCTTT TCCTCCCTTT CCACGACCCG ACATTTTTTC AGCGAAGATT 
    CAGTTTTTCT CGAGAGAAAT TGATGTTAGT AGAAGAAGAA GAACGGTTCA 
    GAGTAGATTT GGGTGAGAAA GATGTGAAAT TGTTTTTATA GGCAAAGACG 
    GAGAGTCTAT TTTTTGAGCA ATCAGATCGC ATAATAGATC TAACGGCTGA 
    GATATCGATC CGTGTGTACA ATAAAATGAT GTATAAACCG TCGATCTGTT 
    TTAATCGACG GTTCATATTA GTGATCCGCG TGATGGCAGT GATAGCCACT 
    AAGAATCGTC TTTTGTTTTA CATGTGGCGC CACAAATTAG GGTAATGAAG 
    CG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24052077 [Map]; Strand: c
      • AT5G59690.1 - [+] show detail - Histone superfamily protein
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 53-3230-1 - 3-prime edge 
    TTTGTATTGG GTTTGGCGTT TAGTAGTTTG CGGTAGCGTT CTTGTTATGT 
    GTAATTACGC TATTTCTTCT TGCTTCAGCA GTTTCGGTTG AAATATAAAT 
    CGAATAAAGT TTCACTTTAT CAGCGTTGTT TTAAATTTTG GCACTAAATT 
    GGTTAAAATT GCTTCAATAT TGTATCTAAA TAGAAGAGAC AACATGAAAT 
    TGGACTTTTG AGCTCAAATC TTCGAACATT TATTTCCTGA TTTCACGATG 
    GATGAGGAAA ACGAAAGGGC GGTTCCTATG TCCGGGAAAG TTCCCGTAGA 
    AGACAATGAG CAAAGTTACT GAAACGAGGA CACGACGTCG CATTGGTACG 
    GATATGAGTT AAACCGACTC AATTCCTTTA TTAAGACATA AACCGATTTT 
    GGTTAAGGTG TAACAGTGAG CAACCGATAC AAGTTTGA

AT5G59690.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: thylakoid; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR