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53-3278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23478390 [Map]; Strand: w
      • AT5G58000.1 - [+] show detail - Reticulon family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3278-1 - 5-prime edge 
    GATGTATCAA GGTCGACGCT TGTGTTTGGC TTCGGAACAT TCCTCATCAT 
    CTCTTCTTCC TACGCCAATG ATCTCAATTT CAGGTTCTTT AGTTCATCTA 
    ACCTCNGAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23478266 [Map]; Strand: w
      • AT5G58000.1 - [+] show detail - Reticulon family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3278-1 - 3-prime edge 
    CCTCCACATC ACCAGATCCA CTGTCCAGAT TTCATTTCAT TATTTAACAT 
    ACTTTAGACT TTTCATAGTA AAAAAATTTG TAGATGGAAT TATGCACAGT 
    AAACTGTTAA GAAACTCACC CAGACTCTGC AATTTACTCT GTGAATGAGT 
    AAAGTTGTCT TCTTGCTCTG CAAATCTATC TGGACACAGT CGTGAAAAAC 
    AGAGGATTCA TCAGAATTCA GTAAGCAAAT CGCGGCCGAT GAAACAAAGC 
    ACTGAAATTC GGATTAAACA ACCTGTGCTT GAAGTAGAAT TTGGTGGGGC 
    CGAGTAAACA GAAGTTGCCC TTTTGATCAC CGGAGGCGAA ACTTTACGAA 
    CGGACGACGG AGATGGAGCT GTTCTGTTTT GAAATTGACT AAACTTTTTA 
    ATCTCAACAC CACCAACTCT GTTTTCCTTG GCTACATTCA T

AT5G58000.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 1128 Blast hits to 1113 proteins in 146 species: Archae - 0; Bacteria - 2; Metazoa - 759; Fungi - 49; Plants - 88; Viruses - 4; Other Eukaryotes - 226 (source: NCBI BLink).
Link
InterPro Scan - TAIR