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Mutant Lines
53-3324-1

53-3324-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 183738 [Map]; Strand: c
- AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron1 (5UTR)
- AT4G00420.2 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron1 (5UTR)
- AT4G00420.3 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
  Distance: 0; Region: intron1 (5UTR)

CTTGTGTGTG TGATTTGAAT TGTCTTGTGT GGTTAGCAAA ATGCTGTTTA 
ACTACTAAAT ATTTGGGTCT GTCTTGTTGT TTAGGCAAAG AAGATATTTG 
TCTATNGTTG NTTANGAACC TGAAGTGTTG AGANCNGNAN TCTAATCAAC 
AGGGTTTTAN ATACNGAGAN GAAAGATGTA TAAANANCTG AGANAGTATA 
GACGACTNAN AGAANACCAT CNANNAAAAT NCACCANAAT AANNCGTGTT 
CNTTAGTANA AAAAGANCCN ATCANATNCA CGTGTNNNAC ACCNANANAN 
TAAATNCNTC CGNCCAANNA TNNNATNACA ACAACNNTNC TTNGACCACC 
NCCCACAAAA NACACCCNNG NAAATAATNT TGTTTNGNGA AGNCGGAAAA 
GAANTTTNNN AAANATAATC ANTNAGANGN NNCCANNCCC TNNNNGNNGC 
GNAAAANAAN NCTTTTTTTT GAAATNAAAC CCAACCNNNT TTTAAAAAAA 
AAANAAANNA AANNNGGGGN GTGGGAGNGG NNAAAAAAAA AAANGNANNG 
NTTCCCCCAN AAGNNANNNC CCNAACAAAA AAAANANTGN NCCTNNCTTT 
TTTTTTGGGG GNGNANNGNN NANNNNCCCC NCCCCNCCCC TTTAAAAAAA 
ANAAAGCNNG CCCGGGGGNN NNNNCCCNCN NNANAAAAAA AAAAANAGNN 
GGNNNNTGNG GGNNNGCCCC CNNCNAAANG AAAAAAGAAA ANGAATNTTT 
TNTN

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 183807 [Map]; Strand: c
  - AT4G00420.1 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
    Distance: 0; Region: intron1 (5UTR)
  - AT4G00420.2 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
    Distance: 0; Region: intron1 (5UTR)
  - AT4G00420.3 - [+] show detail - Double-stranded RNA-binding domain (DsRBD)-containing protein
    Distance: 0; Region: intron1 (5UTR)
Flanking Genome Sequence: 53-3324-1 - 3-prime edge
```
TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCAC 
ACAAGACATT TTGCTAATTC ATCACACTCA CTTATACTAT GGAAAAGCAA 
AACCATAAGA ACACACAATT CAAATCATTG TCTCATATGG CATCTTACAA 
CACAAAATAA GAAACCATCA AATATTTATT AGTTAAACAG CAGATACTTT 
TGAGATC
```

AT4G00420.1

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.2

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 72 Blast hits to 72 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00420.3

Model type: Protein coding
Short Description: Double-stranded RNA-binding domain (DsRBD)-containing protein
Computational Description: Double-stranded RNA-binding domain (DsRBD)-containing protein; FUNCTIONS IN: double-stranded RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 1 (TAIR:AT1G80650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR