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53-3350-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425451 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -45; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -285; Region: promoter
    Flanking Genome Sequence: 53-3350-1 - 5-prime edge 
    AGCTATTGTA TGTTTGTAAA TCCCACATGG GAGGAGTTAA GGAGTGCACG 
    TGCACACGTA TGTGTGTCTT CTTGTCCTTT CTTTGATGGT CAAATATAGA 
    AGAAGAGTTA TTTGAGAGAG AGAGAGAGAG GCTCTGGAAA TCTTGNGATC 
    CATAAATTGT CTCTCTTCTT TTCCTCTGTT CTCATATACA AGGAAAAGGG 
    CTNCCTCTGT TCTGTNCCTA ATAAATATCT GAAATCAAAA ACAGAGAGAG 
    TCTTTTCTTT TTTTCTTTCA CTCTATCTCT CTCCACACAT GTNACTTACA 
    ACTTAATAGT TTCTCTATAT CTCCTTGAGA TCTCCATCCA GCTGTTGCTT 
    TTTTTACTAA ACAAAACTCC TCTTTGTGTG AGTGAATGAA TGGAAGTTNC 
    CGACTCTCTC TTCTTTTGTT TTTTCAACAT ACTTCATTCA TTCATTTTAN 
    CATAACAATC GGNGGTTGGG GATGATATGA GATGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425574 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -168; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -162; Region: promoter
    Flanking Genome Sequence: 53-3350-1 - 3-prime edge 
    TGTTCTCATT ATTATTATTT CCTTCTTGCC TTGCACCACC ATTGTTAACT 
    CTATTCAATT CAAAGTTTCA AACCCTTTGA CCAATGCATC CCCTTATTGG 
    GCTTTGATTA TATGGGCCCT TTCTATTTGA TATTTTTCAA TATATGGCCC 
    GTTAATAAAT TTAATATATA GCTTCGGCCT TATAAGAAGA ATTCAAGCCC 
    CTCACCGATA CTCTAGTCCA AGCCGTGGGC AGAACCAAAA TAAGAGAACA 
    AAAAAAAAGT TTGTTTTCTG GAATTGTTTT CTGGAATCGT CGCGATAGTT 
    GCTGAACTCC GTCGCAACTT CAATGGCATC TGCTCACTCC ATAGCCGCCG 
    TTTCTGTTCT CGATGCGGCC TCCAAGCAAG CAACACTTCC TTCTTCTTCT 
    TCTTCTTCCT CTGCGCTCTA CCCTCTTTCT TCTACT

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR