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53-3360-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11724136 [Map]; Strand: w
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -2572; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -15141; Region: intergenic
    Flanking Genome Sequence: 53-3360-1 - 5-prime edge 
    CATACACATG ACATCAAGTC ATATTCGACT CCAAAACACT AACCAAGCTT 
    CTTCTAGCTT CTCAAAGCTT TCATGGTGTA GCCAAAGTCT GGATGAGTCT 
    TTGGCTTTGT ATCTTCTAAC AAGGATACAC TACNTTAGGC NTTTTAAGAT 
    CGGGTTGCGG TTTAAGTTCT TATACTCAAT CATACACATG ACATCAAGTC 
    ATATTTGACT CCAAAACACT AACCAAGCTT CTTTTAGCTT CTCAAAGCTT 
    TCATGGTGTA GCCAAAGTTC GTATTAGTCT TTGGCTTTGT GTCTTCTAAC 
    AAGGATACAA TTCTTACGCT TTTAAGATCG GGTTGTGGTT TAAGTTCTTG 
    TACTCAATCA TACTCATACA TCAAGTCATA TTCGACTCTA AAACACTAAC 
    CAACCTTCTT CTTGCTTCTC AAATCTTTCA TGGTGCAGCC AAAGTCCGTA 
    TGAGTCTTTG GCTTTGTTGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11733574 [Map]; Strand: c
      • AT5G31804.1 - [+] show detail - transposable element gene
        Distance: -12010; Region: intergenic
      • AT5G31821.1 - [+] show detail - transposable element gene
        Distance: -5703; Region: intergenic
    2. Chromosome: 2; Position: 3619796 [Map]; Strand: c
      • AT2G08986.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 53-3360-1 - 3-prime edge 
    TGTGTATGAT TGAGTATAAA AACTTAAACC GCAATCCGAT CTTATAAGCC 
    TAAGTAGATT TTCCTTGTTA GAAGATACAA AGCCAAAGAC TCATACGGAC 
    TTTGGCTACA CCATGAAAGC TTTGAGAAGC TAGAAGAAGC TTTGGTCAGT 
    GTTTTGGAGT CGAATATGAC TTGATGTCAT GTGTATGATT GAGTATAAGT 
    ACCTTAAACC GTAAACGGAT CTTAAAGGCG AAAGAATTGT ATCCTTGTTA 
    GACGACACAN AGTCAAAGAC TCATATGGAC TTTGGCTACA CCAACAAAGC 
    TTTGAGAATC AAGAAGAAGG TTGGTGCGTG TTTTAGAGTC GAATATGACT 
    TGNTGTCATG TGTATGATTG AGTATAATCT A

AT2G08986.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G40104.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G31804.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 3.3e-259 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G31821.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-86 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR