1. Home
  2. Mutant Lines
  3. 53-3381-1

53-3381-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21933828 [Map]; Strand: c
      • AT5G54045.1 - [+] show detail
        Distance: -761; Region: promoter
      • AT5G54050.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3381-1 - 5-prime edge 
    AGTTACTATA CTTGTGATGA GTGTGGGCTA AGTCTCCATA TTGATTGTGT 
    ACTTGGAGAT TTATATTATA TGAAGCTAGG ACACCAAAAC CCTGAGATGG 
    AGATACATCC TAACAATGGT GCTACTCGAC CTTCTTGCGC CCGTTGTGGA 
    TTTCGTTGCA AGTTCCCCTT CTTCGTTAGG GGTATAAAAG AACAATCTGC 
    TCTTTATGTT TGTTCAATAG ACTTATGCCC AAGGTAGGAC TAGTTATAAC 
    TATTCACATT TATGTTTGAC ATTCTTTGTC TATATTGTAA AACAGTGTGC 
    TTTTAAAAGC TTTTCAACAT TTGATGTTAA GAATTATATT CCAATTTTTA 
    TTTTCTTTCG CATGATANTA TATTTTATGA AGAAAAAAAT GAGAATAAAA 
    AGGGGAAATT ACATAAGTTA ANCAATTCTT TCCTACCAAA AATAAATTAA 
    TTAATTCTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21933950 [Map]; Strand: c
      • AT5G54045.1 - [+] show detail
        Distance: -883; Region: promoter
      • AT5G54050.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3381-1 - 3-prime edge 
    CGTACGCTCG GATCTGTCTT CGTCTCACAA ATATCACACC ACAAGTCACC 
    ACTTGCGTTT CCCACACCTT GACATAGTGA CAGAAAATGA TCATCACACC 
    TGTGTTTTAC CTTTCTTGGT AAAGTAGCGC ACCTCATGCA TAAAGAGTAT 
    TCATCTCACT CGAC

AT5G54045.1

Model type
Pseudogene
Curator Summary
pseudogene of UF3GT
Link
InterPro Scan - TAIR

AT5G54050.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR