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53-3383-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24098988 [Map]; Strand: w
      • AT5G59810.1 - [+] show detail - Subtilase family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 53-3383-2 - 5-prime edge 
    TGGCATCTAC CTTTCCACCT AGCTGGAACA GCTCCATACC CTTCATCGCT 
    GAAGCTTTTT GACTCAGGCC ACACACCTTC ATCAACATAC ATATTTTATA 
    TCATTCATAA CTATGAAAGC AATTATGATG ACCAAAGCAT ACCCTTGTTT 
    TGAGATTTAC CTGTGTCTAA GTTAGCGATG ATTGTATCCT CTCCGTATCC 
    TGCTTTATTC CAAAGAGAGG ACTTGTGAAC AACACCATTT TTCGCAAGGA 
    GCATGAAATT CCATGAATGA GTGGTATGAA GTTTTCTTCC TTTGTTGGGG 
    AATACAGAGA CTACATCAGG ATGCTCTGCA TACAATTATT TTAAAAAATT 
    TGTTAGGTTA AACTAAAAGG ATTGAGAAGC ATCAAAAGCA GAATATGAGG 
    TTTGATGATC TCACTGGCGA TTTCTGCAGC TTCATCTAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19916607 [Map]; Strand: c
      • AT5G49138.1 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT5G49130.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3383-2 - 3-prime edge 
    GTGGGTGCAC GTTAGTCTCC GTCCTTCTTC ATCTTCCCAT TACTGCTTTC 
    TTCACGTTTT ACATCTCTCT CGGAGTTCCC GGAGTCGCCG TCTCTTCTTT 
    TCTTACCAAC TTCATCTCAC GTCGACGAGA AGGG

AT5G49130.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G71870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G49138.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G49130
Link
InterPro Scan - TAIR

AT5G59810.1

Model type
Protein coding
Short Description
Subtilase family protein
Computational Description
SBT5.4; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT2G04160.1); Has 6522 Blast hits to 5856 proteins in 960 species: Archae - 194; Bacteria - 3635; Metazoa - 89; Fungi - 206; Plants - 1959; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Link
InterPro Scan - TAIR