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53-3396-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23920949 [Map]; Strand: c
      • AT5G59300.1 - [+] show detail - ubiquitin carrier protein 7
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 53-3396-1 - 5-prime edge 
    ATGAGAAGAA TATATTCGAA TGGAGCGTTA CCATTATCGG ACCTCCTGAT 
    ACTCTCTAGT AAACAACTCT CTTCCTTTTT TGCTTTCTTT AGATTTTTAG 
    TTACTTTTTT TTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23921065 [Map]; Strand: c
      • AT5G59300.1 - [+] show detail - ubiquitin carrier protein 7
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3396-1 - 3-prime edge 
    CTTCTCATCA ACGAGACCAG CAGAGAATCC ATCAACAGGA TGCTTACAGA 
    GATCTGAATC AAACAAAAAT CGGATTTAGA GAAGAACATA ACAATCACAA 
    GATTGATTTT GGTAAGGAGA GAGATTCCAA GGGCNTTGCC TTTGAGTTGT 
    TTCTGAAGGA GAAGGCTAGC TTGCGAAGCC ATGGATGATG GTGATAGAGA 
    AATCGAGAGA ATTGAAATTG AGATTTTTTT AATATGACAA GGTTCTGATT 
    TTGTGAATTT TCGGGAATCG ATGTTTTCAT TATGAGAACA CATAGAAAGA 
    GCTGGGATCT GCTACGGGCA TACCTATTTT CTACTTTACT ATTCTAACCA 
    ATAGGGTTTT GTGACTTTTC CACTTTCCGT TAACTTCCGA AAATTCTAAC 
    AACGATTGTA GTTTAACCGG TTTTGATTTG GTTTTTACAG ATTTTCGGTT 
    CAGTTTCGGT TTAGTCAGAT TGCAAGAAAA AACAGGTACC AAATCAAAGA 
    TATCAAAATT CACTGTTATG TGACTAGAAG GTTCATATAT CACATGCAAG 
    ACAAAATCAA AATGCGCATA CTTATATTTT TT

AT5G59300.1

Model type
Protein coding
Short Description
ubiquitin carrier protein 7
Curator Summary
ubiquitin conjugating enzyme E2
Computational Description
ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR