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53-3413-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212540 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3413-1 - 5-prime edge 
    CATAGGACAA TGTGTAAAAA GATAAGAAGA AGTTCAGATC AAAGCGAGGA 
    GATCAAAGTG GAATCTGATA GTGATGAACA AAATCAGGCC AGTGATGATG 
    TTTTATCTCT TGATGAGGAT GATGACGATT CTGATTATAA TTGTGGTGAA 
    GACAATGATA GTGATGATTA TGCCTGATGA AGCTGCTGTC GAGAAAGATG 
    ATAATGATGC TGATGATGAA GATGTTGATA ATGATGCTGA TGATGTTCCT 
    GTTGAAGATG AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212658 [Map]; Strand: c
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3413-1 - 3-prime edge 
    CCTATGCTCA TAGATACAGA AATGGAAACA ACTAGAGCCA TCAAACTCAA 
    ACTCTAAGAA ATCTCCTCCC TTGAGATCTT CGTCCTTCAC AATCCTCTTC 
    CACCCATTAA CCATAACGAA TTTCTCAGTA TCATCATCAC CACAACATTT 
    NTTTAACTCC AATTTCCAAA TATTTCCAGA AATGCTTNTA ACAGTTACAG 
    TTTCAGGCAA AGACTTTGGT AAAAATCTGG TGAAAGAAAT GGGTAGTACC 
    TGCATTAT

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR