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53-3447-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24754858 [Map]; Strand: w
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: intron8 (CDS)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 53-3447-1 - 5-prime edge 
    AATGTATGCA GTTGCTCAAA GCGAAGTCAT CGATGCTTCT AAAAAGGTTT 
    ATTTTTGTTA CAATAATTTA GAAAGTTGCT TTATTTAGAT ATTGGGAATG 
    ATTTGTATCC TCTGTTTTCT TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24754735 [Map]; Strand: w
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon8 (CDS)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 53-3447-1 - 3-prime edge 
    TCCTTTAATG TGACGGAGTT CAATCTTCAG CTTCTCTAAC TCAAAGTCTT 
    TATGTATCTG CTTGTTATGA ATCCCACATT AGTAAAACAG AATGTGTAAC 
    TTCACTCATT ATCAACTGGT TTTGAGAAGG AAAATAAACC TGGCTACTAG 
    ATGAAGTAGG GTCACNTGTA GGTACTTGAG CTTGAAGCCT CTTCCATCTG 
    AGAGCTTCTC CAGCTACTGA TATCACTTCC TCCATACCCG ATTCCGGAGC 
    TGCTTGTTCG ATAAAAGCCC TTCTGGTTCA GTAACTTTGA TTCATCT

AT5G61560.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61560.2

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).
Link
InterPro Scan - TAIR