Home
Mutant Lines
53-3454-2

53-3454-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 24737030 [Map]; Strand: c
- AT5G61500.1 - [+] show detail - autophagy 3 (APG3)
  Distance: -177; Region: promoter
- AT5G61510.1 - [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
  Distance: 0; Region: exon5 (3UTR)

GAACTGCTCT TGCCATGAAA ACATATACAC AATGATGTTA GTATCTTTTT 
CAATAAGGGC AATGAGATTT CCTTTGTGAT GGACAAAATA GTAAATGTAC 
CTTTTGGACC TGAATGACAA TTTGAGAATA CAAGGAAACG GGACCCGTTA 
ATGAAACATC TAAAATAGAT GGGGTAAAAA CGTAAATATA CAGAAGTATG 
AGTACTATTG GAGATTTTTC TTAAAATATT ACAAAGAGCC AAATCATCTT 
CCTAAAATTT GACGGAATCT ATAAGATAAT TTTCTCCCTA GGGATTAGGG 
CTCACAATCT CAAATCTCTG ATTCTTCGAT ACGATAAATT CTTCCTCGAT 
ATAGAATCCA CTGATTAGAT CCTAATTCGT CGCCTAGCTC AAAAGATGGT 
GCTTTCGCAA AAGCT

3 prime edge [+] show sequence

Chromosome: 5; Position: 24737091 [Map]; Strand: c
- AT5G61500.1 - [+] show detail - autophagy 3 (APG3)
  Distance: -238; Region: promoter
- AT5G61510.1 - [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
  Distance: 0; Region: exon5 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCGC 
CGAAGAGCAC GACGGAGCCA GAGGTGATCC TATTCTCAAG ATCTGCGTGA 
GCATCAGCGA CTCGAGACAA CGGGTACTTG TGATTCACAC GAGCCTTTAA 
GATGCCGGAT GTAACATTAG CGAAAACCTC TCCTGCACAT TCCAAGAGCT 
CGTCGCGAGT TTCATTGTAA TGCATCATGG AAGGTCTTGT CAAGAAGAGC 
GACTTTGGAG CAAGATCAGA TAATGGAATC GGATCNGNAG ANCCNGCCGA 
TTNCCCCACN TTCCACCATG TATCCTCGGC TCTTCAAACA TGCTAACGAT 
CCCTGGAAAT TTATAAAAAA TTCATTATAA GAAATCCGAA AAACCAGCTA 
AAGAACATAA ACAGTCTGGC TCTTTGTGAC AATACCTTAA AGGTGTCTTT 
TCCCACAGAG TCATAAACAA CATTTACTCC TTTACCCGAT GTAATGTCAT 
TGACTCGGGA AACAAAATCC TCGTTCTTGT ACATAATAAC ATGGTGGCAT 
CCATCTTCTT TGGCTTGAGC CGCTTTCTCA TTGGTCGAGA CAGTTCCAAT 
CACAGTGGCT CCAAGCGCAT TTGCCCATTG ACACAACAGA GACCCAACTC 
CACCAGCTGC AGCATGAACA AGGATTGTGT GCCCAGGTTC GACCTTTCCA 
AATACNAATA GGACTTGAGT CATATAGTGA ATAGATCTTT GAAAACGCGA 
CCAATATAAC AAAACTCTAC TCTGT

AT5G61500.1

Model type: Protein coding
Short Description: autophagy 3 (APG3)
Computational Description: ATG3; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135), Autophagy-related protein 3, C-terminal (InterPro:IPR019461), Autophagy-related protein 3, N-terminal (InterPro:IPR007134); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G61510.1

Model type: Protein coding
Short Description: GroES-like zinc-binding alcohol dehydrogenase family protein
Computational Description: GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: cell differentiation, response to high light intensity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR