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53-3463-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8829931 [Map]; Strand: c
      • AT5G25400.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: 5599; Region: intergenic
      • AT5G25410.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -1739; Region: intergenic
    Flanking Genome Sequence: 53-3463-2 - 5-prime edge 
    CTTATATCAG TTATTACCTA TTTTATTTCT ATAATGATTC AGGTGGTAGA 
    AAAAACAATT GATGAGTTTT ACGTGAGTAT AAAATTGAAT CTGATAGCTT 
    TTTGAGTATT TTAGAATTTA CATTTGAATT TATTTTTGTA AATTTTGATT 
    GAAAAAGTTA ATTTTCATAA ATGGGGAGAT GGCAAGATAT TGTTGCGAGT 
    ATAGGCGATA GTTTCCACTT TCCATACTTC ATAGTTTATA TGTCCAAAAA 
    AAGAAGTTAC TTCGTTAATT TGTTTCCACT TTCCACTTTC TCACTTTCTT 
    CAATATATCT CATTGGTTGT TTAATCAGTT TCTCAAAGTC TTTGTTACTT 
    TGTTAGTTTG TTTTCTATGT CACTTCTTTC ACCTGCATAA GAGTATATAG 
    AGAATAGTTA GTTTCTTTGT CTCAAGTTTC GAAAAGTATA TTGAACATCA 
    AACTCGTTAT TGTTTTGTCT ATTGTTTCTG TGATTCTCTT ACTTGCGGTT 
    GCTGGTAGAC CATTAAAACC TTCTCTGTAA ACTATGTTCG TCACATATAT 
    ATCTTGCTTC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8830047 [Map]; Strand: c
      • AT5G25400.1 - [+] show detail - Nucleotide-sugar transporter family protein
        Distance: 5715; Region: intergenic
      • AT5G25410.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: -1623; Region: intergenic
    Flanking Genome Sequence: 53-3463-2 - 3-prime edge 
    GATATAAGTA CACATTACGA TATCGTGAAG GATTCAAGTT TCTACAACCA 
    AAAATAAAAG AAATGGCCCA AGAAGAGGTA TAGCTGTACA TGTATAAGTT 
    CATCAAATCG TTAATAACAC CTCTCATCCT CTATTCTTTT TCTTATTCTG 
    CCTCTTATTC TCATCCCAAA TTGCTGCTTA AATCACCATC GTGAACATAT 
    GAATTTCTCA GACAAGCAAA AGCACCAAAG AAACCCAATG AAAAATACAT 
    AAATACACTT TGGAAAGCTG ATTTATAAAC ATACACTAAT GTAGGTACAC 
    AACCATTTAA TTTGTTATTC AAATCAACAA TATGGTTTAT TCAACACAAA 
    TAATTGAACA TGCAAACTAA TAACGGTTTC CAACATTCAA ATATCATTAG 
    CTAGGTGAAT AGCAAGATTT CCAACAAAAG AAGTGTAAAA CGCCAGACAA 
    AGCAGCACCA AAGCTAACTA TTTTTCAAAT GCTTTAATAT TTTCTCCACT 
    ATGTATGATA TATTCGTTAC AA

AT5G25400.1

Model type
Protein coding
Short Description
Nucleotide-sugar transporter family protein
Computational Description
Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G11230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25410.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT5G60380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR