1. Home
  2. Mutant Lines
  3. 53-3516-1

53-3516-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212464 [Map]; Strand: w
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3516-1 - 5-prime edge 
    ATATTCATCA GCATCATTAT CATCTTTCTC GACAGCAGCT TCATCAGCAT 
    AATCATCACT ATCATTGTCT TCACCACAAT TATAATCAGA ATCGTCATCA 
    TCCTCATCAA GAGATAAAAC ATCATCACTG GCCTGATTTT GTTCATCACT 
    ATCAGATTCC ACTTTGATCT CCTNGCTTTG ATCTGAACTT CTTCTTATCT 
    TTTTACACAT TGTCCTATGC TCATAGATAC AGAAATGGAA ACAACTAGAG 
    CCATCAAACT CAAACTCTAA GAAATCTCCT CCCTTGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24212354 [Map]; Strand: w
      • AT5G60130.1 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: exon2 (CDS)
      • AT5G60130.2 - [+] show detail - AP2/B3-like transcriptional factor family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 53-3516-1 - 3-prime edge 
    TATGTGATGA TGAAGATGTT GATAATGATG CTGATGATGT TCCTGTTGAA 
    GATGATGATT ATGTTGAGGC TTTTGATTCT AGAGATCATG CTAAGGCTGA 
    TGATGATGAT GAAGATGAAA GACAGTATCT GGATGANCGN GAGAACCCAT 
    CTTTTACTCT GATCCTTA

AT5G60130.1

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60130.2

Model type
Protein coding
Short Description
AP2/B3-like transcriptional factor family protein
Computational Description
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60140.1).
Link
InterPro Scan - TAIR