1. Home
  2. Mutant Lines
  3. 53-3520-1

53-3520-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5573590 [Map]; Strand: c
      • AT1G16290.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -52; Region: promoter
      • AT1G16300.1 - [+] show detail - glyceraldehyde-3-phosphate dehydrogenase of plastid 2
        Distance: -720; Region: promoter
    Flanking Genome Sequence: 53-3520-1 - 5-prime edge
    CATTTGGCAA ACATGTTACT TATGGATGTT GTTAACGATG TGTTCTAAAT 
    AAGCTTCTGT TTCCTCTTGT TTTTCGTTTG TTTCTGATAG ATATCAATGG
    AAAGGTCGTA TAGCAATGCA AGAATGGCCA ACAGTTTCAC GTTCTGGAAT
    GATTGTGTTG AGCCAGAGGA TTTAGAAGAA ATGTGGATGG ATCCTGCGGT
    CAGTGCTGAA TGGATTGATG TTGGAGAGAC TAAAGGCCAG AAGGTTCACC
    TCTCAAGGGA TCCTGATGGT CAGCCTTATC TTACACAGAC CGAGATGAGG
    GTAATCTATA AGAAATTTCA AACATTCCAA TACAAGATTG ATGTGGATTT
    CTAGTTAGAC CTTTCTTTCT TTCTGCCTCT ACTTATTGAG ATCAACCCCT
    TACATTTTCA GGCTGTTTCT GATATAACTG TCCGGAGGCA TTTTGATTCC
    ATCTTGGATT CGGTATGCTT CATTAGAAAA CTAGTAGTTT TGAGCTTGGT
    TTTAGCTACT GTTTAGGTTA TTGAAATTAT CTATGCCCCT TTATGATCTT
    GAAG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5573706 [Map]; Strand: c
      • AT1G16290.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -168; Region: promoter
      • AT1G16300.1 - [+] show detail - glyceraldehyde-3-phosphate dehydrogenase of plastid 2
        Distance: -604; Region: promoter
    Flanking Genome Sequence: 53-3520-1 - 3-prime edge
    GCCAAATGTA AAGAAGAAAA TCGAAATATC AGACCTAGCC GAAGGCTTAA 
    GCGGGAAGGA AGAGAATATC GACGAGAGAA GCAGAGGAAG AAGGTTTCTC
    GGCGAATCCA GAGAGAAGAA GATGATGAAG ATTCAAATTA ATCTCTGGGA
    AATTCAAGAG ATACAGAGAA TT

AT1G16290.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16300.1

Model type
Protein coding
Short Description
glyceraldehyde-3-phosphate dehydrogenase of plastid 2
Curator Summary
Encodes one of the chloroplast/plastid localized GAPDH isoforms (GAPCp1/At1g79530 and GAPCp2/At1g16300). gapcp double mutants display a drastic phenotype of arrested root development, dwarfism and sterility. GAPCps are important for the synthesis of serine in roots.
Computational Description
glyceraldehyde-3-phosphate dehydrogenase of plastid 2 (GAPCP-2); CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase of plastid 1 (TAIR:AT1G79530.1); Has 25238 Blast hits to 25227 proteins in 6343 species: Archae - 51; Bacteria - 10898; Metazoa - 2382; Fungi - 2852; Plants - 3834; Viruses - 0; Other Eukaryotes - 5221 (source: NCBI BLink).
Link
InterPro Scan - TAIR