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53-3522-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24251529 [Map]; Strand: c
      • AT5G60230.1 - [+] show detail - splicing endonuclease 2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60230.2 - [+] show detail - splicing endonuclease 2
        Distance: 0; Region: exon1 (5UTR)
      • AT5G60240.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon2 (CDS)
      • AT5G60250.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: -629; Region: promoter
    Flanking Genome Sequence: 53-3522-1 - 5-prime edge 
    GTCTCTGCTG CTCGAGTCGC GCGACTGTCT TCCCCAGGGA GAGAGAGATC 
    CGAATCTCGT TTCAATTCTC GATCTCTTCC TCTCGATTTC GAAGAATCTT 
    CGTGGCTATT TCTTTTCTAT TTTCACTGTG CAATCGAAAT CAACAATAAT 
    TTTTACGAGA TTACGTTTTT CACTACCGCA TAGCTCTCCA TTGGATCCTC 
    GAAGCATAGC TCTCTCCATT GTTGACCCTG CTTCCCGAGT CCTTCA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24251654 [Map]; Strand: c
      • AT5G60230.1 - [+] show detail - splicing endonuclease 2
        Distance: -41; Region: promoter
      • AT5G60230.2 - [+] show detail - splicing endonuclease 2
        Distance: -59; Region: promoter
      • AT5G60250.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: -504; Region: promoter
    Flanking Genome Sequence: 53-3522-1 - 3-prime edge 
    GTGGTGCCTA CTGAGTACCT CGTGTGAAGT CTAAAAACAG CGTCGTTTCA 
    GCTAAATAAA ATTCTACAAA AATGACGTCG TTTGGAATAA ATTTGTTTGG 
    GCTGCCTATT TATACATGTC TAGGCCCGCG AATTTTAAGT CTACAGTATT 
    TATTTAAACA TCATACACAA AATCCGAAAC AGATAATTTT GATTCAAATT 
    GGTAACTATC GGAAGTATCG GATGAGAAGG AGGAAAAAAA TGCTTTGCTT 
    ATTTCATTAA TTACTACCTT GATACTATCT TTAATAACAG ATTTAATTTG 
    ATATTATAGA TTCCACTTTT TA

AT5G60230.1

Model type
Protein coding
Short Description
splicing endonuclease 2
Curator Summary
putative subunit of tRNA splicing endonuclease
Computational Description
splicing endonuclease 2 (SEN2); CONTAINS InterPro DOMAIN/s: tRNA-intron endonuclease (InterPro:IPR006676), tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA intron endonuclease, N-terminal (InterPro:IPR006678), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60230.2

Model type
Protein coding
Short Description
splicing endonuclease 2
Curator Summary
putative subunit of tRNA splicing endonuclease
Computational Description
splicing endonuclease 2 (SEN2); CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, catalytic domain-like (InterPro:IPR006677), tRNA-intron endonuclease (InterPro:IPR006676), Endonuclease TnsA, N-terminal/resolvase Hjc/tRNA endonuclease, C-terminal (InterPro:IPR011856), tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60240.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60250.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR