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53-3523-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24255360 [Map]; Strand: c
      • AT5G60250.1 - [+] show detail - zinc finger (C3HC4-type RING finger) family protein
        Distance: 511; Region: intergenic
      • AT5G60260.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 74; Region: intergenic
    Flanking Genome Sequence: 53-3523-2 - 5-prime edge 
    GTTCTGTAAT CTTTTTCAGT TTACCGGAGA AGTTGGTCCG GTGTCTCTCC 
    GGCCACTTTG ATGACTCACC TTTTCCTTGG TTGATTGTGC CATCCTTATC 
    TCTTTCTTAT CGCTTTTGAT TTTTATTTTA GTTTGGCNTT TTTAATCATG 
    GTTAAGCTTC TAGTCTAGAT TGTTTTAGTT TTATGCTTTT ATCTGTTTAG 
    TTTTCTTATA ATCAGAGTAG AAGATATCAC CCTGTTCGGA TGTTAAGATG 
    GTGAGCACAA AGCAATCATA CTACAAGCAT ATGATGGAAG CTATAAGATC 
    AACTCCAAAC CTTTTGAGTT TTGATGTTTG GTCTTATTGA GATTAGTTAT 
    GATGTTGCTC TTAACAAGCT ACCATTTGAC AACTTTCTCT TTTGAGGCAG 
    AATGTGTTGT ACTTTACTTG TATTTGGTTG TTTGTAAATG TTGTTGTTG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24255476 [Map]; Strand: c
      • AT5G60260.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 53-3523-2 - 3-prime edge 
    TACAGAACCT TCAAAACCAC CATGCCCAAA CTAATTCCAA GGCAGCAAAA 
    ACATCCTTAA CTGCTAAAAG AAACATCTTC TTCTTTATTC AATATGTCAC 
    AAACGAAGAT TGAGATATGG CTTCAAAAAC CTTCGAGAAG AAGCATCTTA 
    CACAAAAACC GGCCATGACG TCGCCGAATG AGCCAACACA TGCCGGACTC 
    AAACCGTCCA TCGCCATAAA AAGGAAACGG TCGATGACGA AAATGATAGC 
    CGACCCAACA CATCGCATAA TAAGCCGGTC GTTGTCGGAC TGAAGCCGGT 
    TGCAACAACC GGACGGCCTT GCCGGAATTA ACCGGACGGC TTTATCGGAA 
    TAATCTGAAC GGCGGAAGAA ATCAAGTTTT TCTCTCTAGA AGATTTAAGA 
    GAGAGAAGAG AGAAAAACTC ATCTCCGTTT TCCCCGACGC TCATGACTCG 
    GGATTAAAGT TAGAGCATTG TTTTCGCTAT ATTTTTCGTC GTTTGGTTAT 
    TGGTTTCGGC TTGCTCATCT TTTTATTTCC CTTCAATGGG ATTGATAGCG 
    AACAAGTAAA TATATTTTTG CAAACATTCG TATTAGTAGA AAACCTTACA 
    AATGGGCCGA TATTGGGCCG GATAAAACCC ATTTTATATA GCTCACCCAC 
    CCACTTACCC TTTGGCGAAA TCAATTCTTT GTTTTTTTTT GTCTAACTCA 
    CCGTCTCTGA ATTACCAGCC CGGCCG

AT5G60250.1

Model type
Protein coding
Short Description
zinc finger (C3HC4-type RING finger) family protein
Computational Description
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60260.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR