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53-3532-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23503384 [Map]; Strand: c
      • AT5G58080.1 - [+] show detail - response regulator 18
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 53-3532-2 - 5-prime edge
    GGGGAGTGAA CAGGATGGTG ACGAGTCAGG TACGCGGAAG AAGCCACGTG 
    TTGTTTGGTC TCAGGAGCTT CACCAGAAGT TTGTCAGTGC CGTTCAGCAA
    TTGGGCCTCG ACAGTGAGTT TCCCCATAGA CCTCTTTAAA CCTTTCCTTA
    TGTGTGATGT CCACTCTTGT TTCTCCTATA GAGTTATTTT GATGCTTTCA
    TGTGTGGGAT CCTCTTTTCA TTTCTCCTTG TGTTCATCAC AGAGGCTGTT
    CCCAAAAAAA TACTTGATCT CATGAGTATA GAAGGTCTCA CTAGGGAAAA
    CGTAGCCAGT CATTTGCAGG TACTAATTCC CCATTCTCTC TTGCATTTTT
    CCCCTTCTTT CGCAAATATA ATCTTGGATG GTTAGACTTG TTTTATTCTC
    TGGTTTTGGT TGCAGAAGTA CAGACTGTAC TTGAAAAAGA TAGACGAAGG
    TCAGCAGCAA AATATGACCC CAGATGCATT TGGAACAAGA GATTCATCTT
    ACTTTCAGAT GGCTCAACTT GATGGACTTA GAGATTTTAC TGCCGCAA
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23364934 [Map]; Strand: w
      • AT5G57670.2 - [+] show detail - Protein kinase superfamily protein
        Distance: -1177; Region: intergenic
      • AT5G57685.1 - [+] show detail - glutamine dumper 3
        Distance: 1070; Region: intergenic
    Flanking Genome Sequence: 53-3532-2 - 3-prime edge
    CTGATACTAC ATTGAATATC TTATATTAAT GTTTTAAGGG GGTCTTACAT 
    CCTTGTAATC ATATTTCATT GTTTGCGTAA TTAAGATCCC CGAGTTTGAG
    ATATCAAATG CACGTGTATG ATGTGTACCG GAGGTTAGTA TTATGTACCC
    AC

AT5G57670.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G18890.1); Has 113420 Blast hits to 112131 proteins in 3664 species: Archae - 114; Bacteria - 13552; Metazoa - 41580; Fungi - 9353; Plants - 32095; Viruses - 456; Other Eukaryotes - 16270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57685.1

Model type
Protein coding
Short Description
glutamine dumper 3
Curator Summary
Encodes a member of the GDU (glutamine dumper) family proteins involved in amino acid export: At4g31730 (GDU1), At4g25760 (GDU2), At5g57685 (GDU3), At2g24762 (GDU4), At5g24920 (GDU5), At3g30725 (GDU6) and At5g38770 (GDU7).
Computational Description
glutamine dumper 3 (GDU3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: secretion by cell, response to virus, regulation of amino acid export, virus-host interaction; LOCATED IN: integral to membrane; BEST Arabidopsis thaliana protein match is: glutamine dumper 2 (TAIR:AT4G25760.1); Has 162 Blast hits to 162 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G58080.1

Model type
Protein coding
Short Description
response regulator 18
Curator Summary
member of Response Regulator: B- Type
Computational Description
response regulator 18 (RR18); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 12 (TAIR:AT2G25180.1); Has 83273 Blast hits to 82938 proteins in 2948 species: Archae - 359; Bacteria - 74242; Metazoa - 38; Fungi - 293; Plants - 2583; Viruses - 2; Other Eukaryotes - 5756 (source: NCBI BLink).
Link
InterPro Scan - TAIR