1. Home
  2. Mutant Lines
  3. 53-3534-1

53-3534-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20376460 [Map]; Strand: w
      • AT3G54990.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G54990.2 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3534-1 - 5-prime edge 
    CTCGCTGCAG AGTCTGATGT GGAGGAGGAA GATGAGTTAG ATTCTTCTTC 
    ACCGGTGGTT GAGATCATTA ATGGTACTTT CCGATCTTGA TCTTCGCTAT 
    AAGAAGAAAA GATCTTTAGG TTAAGATCCA ACATGATCGA ATCTTTAGCT 
    ATAAACGACG TTGTTCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20376344 [Map]; Strand: w
      • AT3G54990.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G54990.2 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3534-1 - 3-prime edge 
    GCAGCGAGAG ATGCTTTCAT CGCTTTTGGA ATTCTCAAAC GCGACGATGA 
    CCTTGTTCCT CCTCCTCCTC CTCCTCCTCA TAAAGAAACA GGAGATCTCT 
    TTCCGGTGGT GGCTGATGCT CGTCGGAATA TAGAATTCTC CGTGGAAGAC 
    AGTCACTGGT TGAATCTTTC TTCTTTACAA AGAAATACAC AGAAAATGGT 
    GAAGAAGAGC AGAAGAGGAC CAAGGTCTCG TAGCTCCCAA TATCGTGGCG 
    TCACTTTTTA CCGTCGCACC GGTCGTTGGG AATCTCATAT TTGGTAAATA 
    AAATTATATT TCATTTTTAA TATTATCATT GCATTTTTAT ATTGTTATTT 
    GTTGAATTAT TGCTATATTT ATCTCTAATT TTGGGTTTGG AATTGATTAA 
    TTTGTAGGGA TTGTGGAAAG

AT3G54990.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.
Computational Description
SCHLAFMUTZE (SMZ); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G39250.1); Has 4731 Blast hits to 4226 proteins in 234 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 4627; Viruses - 15; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54990.2

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.
Computational Description
SCHLAFMUTZE (SMZ); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G39250.1); Has 4786 Blast hits to 4207 proteins in 234 species: Archae - 0; Bacteria - 32; Metazoa - 0; Fungi - 0; Plants - 4687; Viruses - 15; Other Eukaryotes - 52 (source: NCBI BLink).
Link
InterPro Scan - TAIR