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53-3580-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8783406 [Map]; Strand: w
      • AT2G20340.1 - [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
        Distance: 634; Region: intergenic
      • AT2G20350.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1363; Region: intergenic
    Flanking Genome Sequence: 53-3580-1 - 5-prime edge 
    GTAACAAGAG AGTGTATTCC GCTTCGAAAA CTCTTTTTGT GTTGGTTTCT 
    TATTTAGTCA ATGATATAGC ATTCTAGAAG GTCAAGATCA CACGTGAAGT 
    CAAGAGCAAG AAGGAGTGCA CNGTGTGTGT TTTGAGCTGG CAAAGCAACT 
    TGGCGTTAAC GGCGATCATT ATTAACGTTT ACTTTCTTTA CCTTTTAGTA 
    TAAATAGCAA CATGTTATGC TCATGTTTTC TTATGCGAAT AATCTGGTTG 
    TATTCTCTCT GTAAAGACTT CTAGATTTCC CTCATCGTTT TACCGGAGCT 
    TTCTCGTCGA GACTCTTGTA GGTGAAAAGT TGATTTCGCG TTTTATGAAC 
    ATTATATCAA ATTATCGTAA TCGGAATACT CTGTTTCGGT TTTGTGCTTT 
    CTTACTCTGT TCTTTGTTTT ACTCATTATT CTGTTTACGT TATCAGTCAA 
    ACATAAAATT GAAAGCAATT AACTGTCTCA TTTTAGTTAA CTAAATTTGT 
    CTTGAACTAT ATATAATTAG ATCAAAGAAA AAAAATACAA AATATGAAAG 
    TGATGACCGG GGATATTCAA AGGGAGACTC TCATAACAAC TTGGTATATG 
    AATAAAGACT TAAAGCACTG GAATATGAGT ACCTTGTTTC TTTAATTATT 
    GACTCACTGT TTGTACAAAA ACCAAAACCA GCACTGCAAA TGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8783326 [Map]; Strand: w
      • AT2G20340.1 - [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
        Distance: 554; Region: intergenic
      • AT2G20350.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1443; Region: intergenic
    Flanking Genome Sequence: 53-3580-1 - 3-prime edge 
    CTTGTTACAC AGATTGGACT CGGATACGAG GATACGACAA AAAACAAGAA 
    ACCCTACAAA TTACTATTGA TGAGGTTCTT TGTACATATA GTGGTTGTTG 
    CATATCATCA TCTCCTTTTC GTTTTCTTTG CTTTTTGTCA TTCGTTTCTA 
    TATATCATAA ACTTTCTTTA TGTCTCAAAT AAAAGCTCTG TGGTATTGGT 
    CTTCTTGAGC AAGTCATTTA TAAATGACAA AATATTCATG CTTTCTTCTT 
    AGCGTTTTCG GTATCGATCG CTTCAATTTT ACCTATGAAA TTGTTTATAC 
    AAGTTTTTTT TTTTTTAAAA

AT2G20340.1

Model type
Protein coding
Short Description
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Computational Description
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: response to wounding, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: L-tyrosine decarboxylase (TAIR:AT4G28680.1); Has 5452 Blast hits to 5431 proteins in 1792 species: Archae - 99; Bacteria - 1888; Metazoa - 2300; Fungi - 264; Plants - 262; Viruses - 5; Other Eukaryotes - 634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20350.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G67010.1); Has 4615 Blast hits to 4613 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4610; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR