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Mutant Lines
53-3596-1

53-3596-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23719738 [Map]; Strand: c
- AT5G58710.1 - [+] show detail - rotamase CYP 7
  Distance: 0; Region: exon6 (3UTR)
- AT5G58720.1 - [+] show detail - smr (Small MutS Related) domain-containing protein
  Distance: 0; Region: exon11 (3UTR)
- AT5G58720.2 - [+] show detail - smr (Small MutS Related) domain-containing protein
  Distance: 0; Region: exon9 (3UTR)
- AT5G58720.3 - [+] show detail - smr (Small MutS Related) domain-containing protein
  Distance: 0; Region: exon10 (3UTR)

TGTCTGACAC AGACAGAATG TATATTTTTC GCTAACTCTT CTTTAGGAGT 
TTGCTGATAT ATATATTATC GTGTAACTTC TATAAATTCT ACAAATGTTG 
ACAATGCAAA ACGGCATAAG TGCAGAATTT TTGCTACNTG AAAGACATTT 
GTGTATAAAG TCAGACATAG CTCGAGCTAG AAAGCAGACG AAAGAAATAA 
AGCCGGTAGA ATCTTTCATA AAGTAACCAA GACACTCGTT TTAACACAAA 
AGTCATCAAG CACACTAGAG CTCACATCAA TGGATGATCA GATGGAGAAA 
ACTAGAGTTG TTGAGTTACA GGGGAAGCTC ACCACTGTCT ACAATCACCA 
CTTTACTCTT AGGAGTTCCA CTCTGATTTC CTTCAGCTTC GACTTTGTAC 
ACCACATCCA TTCCTGTCAC TACCTTCCCG AATACCACAT GTCGCCCATC 
CAACCTGCAA ACTTTCTAAT CAGCAGACGG AAACAACATA TCGACAATTC 
TATCCATAAT TGAAACTCTT AAGCT

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 23719812 [Map]; Strand: c
  - AT5G58720.1 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon11 (3UTR)
  - AT5G58720.2 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon9 (3UTR)
  - AT5G58720.3 - [+] show detail - smr (Small MutS Related) domain-containing protein
    Distance: 0; Region: exon10 (3UTR)
Flanking Genome Sequence: 53-3596-1 - 3-prime edge
```
TTTTAAAANG GACGAGGTAT TTTACTCGAC CGTTACCGAC CGTTNNCATA 
CCNTGNTANN AGAACTTANA TANCGAGAAN TACGGANNGG ANAAAGAAGG 
AAGCTGNGTN TNGCTNAACA TTTACNGTAA CGACAGAGAG CTTGCATCAG 
ATATNGGACA AAANCNACAT AGATTTTAAN ATCCTAAAGC CAAAACCTGA 
CTTTAGTNTT AGTTATCACT TATTCATCAG AGTCACCTCT CTGGGTCTAA 
GAAACTGAAC TCNCTACTAC CTCCGNCAAG CT
```

AT5G58710.1

Model type: Protein coding
Short Description: rotamase CYP 7
Curator Summary: Encodes cyclophilin ROC7.
Computational Description: rotamase CYP 7 (ROC7); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.1

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.2

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G58720.3

Model type: Protein coding
Short Description: smr (Small MutS Related) domain-containing protein
Computational Description: smr (Small MutS Related) domain-containing protein; FUNCTIONS IN: damaged DNA binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: silencing defective 5 (TAIR:AT3G15390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR