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53-3609-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 303764 [Map]; Strand: w
      • AT5G01780.1 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G01780.2 - [+] show detail - 2-oxoglutarate-dependent dioxygenase family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 53-3609-1 - 5-prime edge 
    TTCATAATCA TTAAGTGAGT CAAGCGATGC AGTCTGCTTA ACAGAATTAA 
    CATAACGTGT CCTTTAGATA CCGCCACGAT TATGCTTTGA TCATAGGAAA 
    ATCACTGGGA GCCAATGGAG AGTTCATAAT CTCTAAACAA CAGTACTTGA 
    TATGGTATGC CACTGGAAAT TGAATATAAA CTATGAAAGC ATGAGAGCAT 
    TTTTTTCCAA TCAAATTCAT GCGATCAGCG GCATAGTAAA AATGGTTCAA 
    AATCAGCGAA ACTAGGTTGA AAGATAATAG TCTAGAGAAT GCGAAAACGA 
    TCACTCACAT GCGTCTTTGG GATCGGAGAG TGAGGAGAAG AACTCATTAT 
    CGTCCTACTC GCCGACGGAG AGCACAGCCG AAGGACGATC TGGTGGCGGG 
    AAGTAAGATG AAACGAGCGA TGGATAGAGT TCAACATAGT CGAAGAAGCC 
    TCCGATTTAT CGGCGACGAC AAGAGACGCA T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 322023 [Map]; Strand: c
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3609-1 - 3-prime edge 
    ACCGTGCCTT GAAGAACCTC ATCGTTTTGT GGTGCCGCGA TCAGAAGATA 
    CCGTTCGAAT TATACGGTGA CGGCGGCGGA GAACCTGCGC CGTGCAAGGA 
    GGCGGTGGAG TTTACGAAGA TGATGGTTTC GTTTCTCATC GAGAAGCTCT 
    CCGTGGCAGA TTCTAACGGT GTCGTGTTCG AGCTCCGGGC GCTCGCAAAG 
    TCAGATACTG TGGCCCGAGC CTGCATAGCC GAGGCTGGAG CCATACCCAA 
    GCTGGTTCGT TATCTAGCCA CAGAGTGCCC GAGCCTTCAG ATAAACGCCG 
    TTACGACGAT CCTAAACCTA TCCATCCTGG AACAGAACAA AACGAGGATC 
    ATGGAAACTG ACGGAGCTTT AAACGGCGTC ATCGAGGTTC TTCGTTCGGG 
    TGCCACGTGG GAGGCTAAGG CTAACGCAGC CGCGACATTG TTCAGTTTGG 
    CGGGCGTCTC GGCCTACAGA AGAAGACTCG GGAGAAAAGC ACGTGTCGTA 
    AGCGGATTGG TTGACTTGGC TAAGCAGGGC CCCACCAGCT CTAAGAGAGA 
    CGCGCTCGTG GCGATCCTAA ACCTGGTGGC TGAGAGAGAG AACGTGGGGG 
    AGGTTCGTTG AGGCTGGGGT AATGGGAGCC GCAGGAGATG CATTCCAGGA 
    GCTACCGGAG GAAGCGGTGG CTGTCGTGGA GGCGGTGGTC AGGANGGGAG 
    GACTCAT

AT5G01780.1

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01780.2

Model type
Protein coding
Short Description
2-oxoglutarate-dependent dioxygenase family protein
Computational Description
2-oxoglutarate-dependent dioxygenase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14160.1).
Link
InterPro Scan - TAIR

AT5G01830.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR