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53-3637-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17367892 [Map]; Strand: c
      • AT2G41660.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 53-3637-1 - 5-prime edge 
    GTTNTTGGTA TGGCACCATT GTTACTTATG ATATATGTCT CAATGGATCC 
    ACAGAGAAAC TAAGAGGGAT GTTATATATG TGTAGATTAT TTGAGGAGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17368010 [Map]; Strand: c
      • AT2G41660.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3637-1 - 3-prime edge 
    AAGAACTCAC TCTTCAGAGA AGCTTCAGCT ACAACTCAAG AAAGATCAAT 
    CCAGTGACTT CTCCGGCGCG TAGCTCACAC NGTTCGTTCT CCTTCTTCCT 
    CCGCCTTAAT CCCAAGCATA CCTGAGCACG AACTCTTCCT CGTTCCTTGC 
    CGGAGATGCT CCTATGTCCC TCTCTCCTCC TCATCGTCGG CCTCTCACAA 
    TATCGGGAAA TTTCACTTGA AGTTTTCTTT GCTCTTGCGT TCTTTCATCA 
    ACATCATTAA CATCCCCGCT TGCAAAATGC TCTCTCTTCC CTCTCCGCCG 
    TCTTCATCNC C

AT2G41660.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Curator Summary
Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.
Computational Description
mizu-kussei 1 (MIZ1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT3G25640.1); Has 258 Blast hits to 256 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR