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53-3647-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17454299 [Map]; Strand: w
      • AT1G47530.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 53-3647-1 - 5-prime edge 
    CTTAAAGTTA ACGAGTCTCT CAGTGATTGT TAGAGGGGTA CAGGTTTGTT 
    ATGTGTTAGA CTTATGTTAG ATTCTAGGAT GGTTGTTGCT AAGCCAAAGT 
    TCTTGATTAA TTTTAAGTAT GAGATTTAAT CTTCATAAGC TTGTTGATCC 
    TTCGTTTTTA TTTTAATGGT CAGACTTGAT CCAATGTTTA TGTTCATCTC 
    AC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 17454183 [Map]; Strand: w
      • AT1G47530.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon8 (3UTR)
    Flanking Genome Sequence: 53-3647-1 - 3-prime edge 
    ACTTTAAGCA TATCAAAAAA CAAAAAGAGA TGATGTTGTT CTCCGATAAA 
    CAATTTTCTC AACATTGAAC ATTGACAAAA AAAGATCAAT AACTGATATA 
    GTCCACAGTC CTAAGGGAGT TGTTGATCAC TCCTGCGCCG TTCCTCCCCA 
    TCTCTGAACT CGACTCTCCG CTTGCTCAGC CTGCATAATT TAGAATT

AT1G47530.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: root hair specific 2 (TAIR:AT1G12950.1); Has 9964 Blast hits to 9893 proteins in 2013 species: Archae - 182; Bacteria - 7111; Metazoa - 140; Fungi - 326; Plants - 1355; Viruses - 0; Other Eukaryotes - 850 (source: NCBI BLink).
Link
InterPro Scan - TAIR