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53-3689-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1107110 [Map]; Strand: w
      • AT3G04210.1 - [+] show detail - Disease resistance protein (TIR-NBS class)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3689-1 - 5-prime edge 
    CAAATCCCTA TCATCCTCAC ATCATTCAGA TCTAGGTATA ACATTCGTTC 
    CAATTTTTTC ATATGATCCT CCATCCCAAC TAAGTCGCTG AAATCACTTG 
    ACGGCGTTGA GATGTTCAAC GTATTTGAAA TATCAGTGGT GACTATTCCG 
    ATCATGTCCG CTTCATTATC CCTAAAAGAC AAGTGGCAAA AAAATACAAA 
    ATATTAATAC TATAAGTCTA TAACACATGT ATGTCAAATT AAAAATATTC 
    ATAATGTTTT TTTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1078931 [Map]; Strand: w
      • AT3G04110.1 - [+] show detail - glutamate receptor 1.1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 53-3689-1 - 3-prime edge 
    ATTGTCATTG TTTCCACGGT AAGGTATGAA TTCAAGCTCG TAGTTAAAAG 
    GAGCAATGCA AGTCTTGAAA ACCTCTACGC AGAATCCAGA GACAGTATTA 
    ACACCTGTTT CAGGATCAGG ACGCACCGAC ACTAGATGCG GGACCTTGTT 
    TCCTGCGGTA ACTAAGACCC TAAGCACCTT CATCTCACCT CGACGA

AT3G04110.1

Model type
Protein coding
Short Description
glutamate receptor 1.1
Curator Summary
putative glutamate receptor (GLR1.1). Contains a functional cation - permeable pore domain. Involved in cellular cation homeostasis.
Computational Description
glutamate receptor 1.1 (GLR1.1); FUNCTIONS IN: intracellular ligand-gated ion channel activity, cation channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus, cellular cation homeostasis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 1.3 (TAIR:AT5G48410.1); Has 3355 Blast hits to 3282 proteins in 359 species: Archae - 20; Bacteria - 507; Metazoa - 2116; Fungi - 0; Plants - 613; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04210.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS class)
Computational Description
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 7287 Blast hits to 7131 proteins in 234 species: Archae - 2; Bacteria - 61; Metazoa - 8; Fungi - 0; Plants - 7211; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR