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53-3712-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7429314 [Map]; Strand: c
      • AT1G21220.1 - [+] show detail - transposable element gene
        Distance: -384; Region: promoter
      • AT1G21230.1 - [+] show detail - wall associated kinase 5
        Distance: -666; Region: promoter
    Flanking Genome Sequence: 53-3712-2 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT CTATGTCAAT TTACAAGATT TTGATCTTTT 
    AATCTGCAAG ATAATAAATA AAACTGGTTA AAAAACAGAG CAATCTTATG 
    CAGCAAGAAT GATAAATTTA ATTTTAGATG AATAACAAAC AAACAAAAAA 
    AAATGAATCA AGGTTTGGAT C

AT1G21220.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.9e-26 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT1G21230.1

Model type
Protein coding
Short Description
wall associated kinase 5
Curator Summary
encodes a wall-associated kinase
Computational Description
wall associated kinase 5 (WAK5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: EGF-like calcium-binding (InterPro:IPR001881), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-type aspartate/asparagine hydroxylation site (InterPro:IPR000152), EGF calcium-binding (InterPro:IPR013091), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: cell wall-associated kinase (TAIR:AT1G21250.1); Has 137298 Blast hits to 123121 proteins in 4733 species: Archae - 125; Bacteria - 14072; Metazoa - 61552; Fungi - 9626; Plants - 33595; Viruses - 427; Other Eukaryotes - 17901 (source: NCBI BLink).
Link
InterPro Scan - TAIR