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53-3713-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24756187 [Map]; Strand: w
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon10 (CDS)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 53-3713-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GNNATACGAT AACGGTCGGT ACGGGNATTT 
    TCCCATCCTA CTTTCATCTT TCACCATAAC GCTCCGACCC ATTTCTACTG 
    TCCAATAACA AAGGTAATGA ATGATACGAA AATCTTACAT TTTATGTCAG 
    ATTTTTGATA CGTTATGTGT TTTGATTTGG TTTATGGGGT CATTGATGAA 
    ATTAGGATGT GATGGAGAAT CCATGTGTTG CTTCGGATGG ATAATCGTAT 
    GAGAAGAGAG CGATTAAGGA ATGGCTTCAG AAGAATCATN AATGNNCNGT 
    GACGGATTTG CCCTTTCCTA GAGATTNTCT TCTTCCTANT CATTCTCTNC 
    TTTCTGCNAT CAAGGAGTGG AGATCACAAC TAATTNTTGG AGNANTTAGG 
    GGNTCTTAAA TTTATACGGC TANANNCGNG GNNGGANAAN AATNTNNCNG 
    CNGANCCCCG CNNNGNCNTT TNNNNCNNNG GNNNCGCNCC NNGGATGGGN 
    TNNACNAANC NCANNACNNC NCANAAANNN NGNNNAGGGG GGGNAGGGGG 
    CCCGGNANAA NTAAAACAAC CCCCNNGGNT NATNTTNTTA NNAGGGGGGG 
    GGGGCCCCCC CCCCCCCCCC NNNCGCAAAA AAAAAAANAG GGGTNGGGNA 
    AAAAAAATNT TTTGGGGGGG GGNCCCCCCC CCCCNNAGGA AAAAAAAANA 
    TTTTTAAAAA CCNNNNNNNN NGCGCGCTTT TTTNAANNNT TTANCCCNCN 
    CNGGGGGGGG GGGGGGTTCT TTTTTTNNNN NNGGCNGGGG NANNNAAAAA 
    AAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24756184 [Map]; Strand: w
      • AT5G61560.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon10 (CDS)
      • AT5G61560.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: 53-3713-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ATGATCAATT AGGTTATCAG CAAACATGTC CCTTGCGATA GACGCAACTT 
    CCTTTAACCG TTCAAGAACC GGCAAAATCT CTTTCCCTAA ATCAGGACGA 
    TCACGCTTTC TCATCTCTGC ACATCTAAGC CCTATCATAA CCATCTCTTT 
    AGCTTCCTTA ACCGGCCAAT CTCCAGCAGT TTTATCCAAG ATCTCTGTAA 
    ATTTCCCGGT TTGATCTCTC AACGCTTTCT CTATCGAATG AGCCAAACCC 
    ATCGCGGATC TAGCTGTGAC TAGCTGAAGA AGTATGATTC CAAACGCGTA 
    GATATCAGAT TCGGGAGTTA CCACTCCGGT TCTTTGGTAT TCAGGATCTA 
    TGTAGAAGAA TGTTCCAACT GGACCGGTTT CGTTGAAAAC CGTTGAGGCA 
    TGAGAAGGAT CAAGATTAAC CATTTTGGAA AGGCCTACGT CTCCGATTTT 
    GCTCACATTG TTCCGGTCTA GGAGGATATT GGCTGGTTTA AGATCGCGGT 
    GAACGATTGG TCTTGGTTCG TTTGTGTGGA GAAAGTAGAG TGCTGAAGCG 
    ATCTCCCAAG CGATTCGGAA CCGCTCGAAC CACCGTAATG GCGGCGGTTG 
    CGGTGTGTCA ACGTTTGGTC GGCGTTTCAT GAGTCTTTCC TCAAGGCTTC 
    CGTTGTGCAT ATACTCGTAA ACTAAGCT

AT5G61560.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1); Has 112471 Blast hits to 110615 proteins in 4538 species: Archae - 130; Bacteria - 13122; Metazoa - 41054; Fungi - 8748; Plants - 32669; Viruses - 288; Other Eukaryotes - 16460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61560.2

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT4G25160.1).
Link
InterPro Scan - TAIR