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53-3871-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18065072 [Map]; Strand: w
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-3871-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTG NCTGNGGGNA TACGNNNGNC TGAACTTGTC 
    AATANNGGTC ACTTTTNGAC GNCNNNNNTN GCGNTNAAGA NANCCATNCT 
    CGTATNNANG NGNTACGCTC CNTNTTNNAA TCTGGCTCAN NCGANATTGA 
    NATCNGNAGC NNANTCCGAC CACCGCTCTC ANGTNACAAG TCTCTGTTNN 
    TCCGGTTTAG NTCAGNTTGC AATNNGAANC NGGTTTTGGT TACAATCTNT 
    TAGCCGGNTN ATTAACGGTT TTTCGAANNG ATTTNGGNNG AAATACGGTA 
    TGTGNGNTAN GATGANAANA NCTGGTNGNA GNCACATCCC GATTATACTT 
    GGGTGCAAGT AACCGGAAAT TTGTTACGTT TTCAGGCGAT TTATTTGGAG 
    CAAGTGTTAC GTGAAGGATT CTCGCACCCA TCGGTAAACG GTATAATGCT 
    ATGGACCGCA CTTCACCCAA ACGGCTGTTA CCAAATGTGC CTCACTGACG 
    ATAAATTCCG GAACCTTCCA GCCGGAGACG TGGTGGATCA GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18065031 [Map]; Strand: w
      • AT4G38650.1 - [+] show detail - Glycosyl hydrolase family 10 protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: 53-3871-1 - 3-prime edge 
    CGCCGTCGTA CCGTTGGAGT TCCCTCACCC TCGCGATGTA TTCGTCAACC 
    GTTGACTTCT CGTCGCTGCA AGTCTCCACC ACGTTGAAAT CATTGAAGAA 
    CAGAGTCGCC AATGAGTCAA TCTCACGAGC TGCGGCGAAG AATCCGTACG 
    ACGCNGTTCT TCCCCAGTCG AGTCTCGTAG AAGTCAAAGT GAAGCATCTC 
    GTTGCTCACG TCCCAATGCA CGAACTCTCC TCTGTACCGA GTCATCAGAC 
    TCTTGATTCG CCGGTTAACC GCCGACCGGA GATCTTCGCC GGTTAGATTA 
    CGAACCCAAT CGGGATTGTA TTTGGGATC

AT4G38650.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 10 protein
Computational Description
Glycosyl hydrolase family 10 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein (TAIR:AT4G38300.1); Has 2063 Blast hits to 2053 proteins in 438 species: Archae - 10; Bacteria - 1176; Metazoa - 20; Fungi - 357; Plants - 277; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR