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53-3873-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22259173 [Map]; Strand: c
      • AT5G54790.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3510; Region: intergenic
      • AT5G54800.1 - [+] show detail - glucose 6-phosphate/phosphate translocator 1
        Distance: -2098; Region: intergenic
    Flanking Genome Sequence: 53-3873-1 - 5-prime edge 
    ATCATATGCA TGTCTTGTCG GAAATAATTG CTTCATATAA GAGAGAATTT 
    AACTTATAAA TTTAATAATT TCTTGATACA AATTGTTCTA ATACAACAAC 
    TTTTATATAT CACTAACAAG AATATTATGA GAAAAAACCA TTAAACTAGT 
    CCTTTTTCAA CACTTTTGTA ATCGTAAATT AACAATATTA TATCTAAAAT 
    ACGTATGAAG TAGTATCATA ATTAACCATT TTCAAGAGTA AAAGGACAAA 
    AGATAGACAA TTATTAGGAA ACAGCTAAAT ATTAAAGATT TGTTTCTGTT 
    GGATACGGCT TAGCATCCTA ATTCCTAATC ATTGGCCTTA ACCGCTCTCA 
    TAATCATATT TAGCTTAACA ACTTGAGAAT CTTTGGTGAC TCACATGCGC 
    ATGTCAATAT GTCATAGCAT CAGCATGTGC ATTTCATTTT CCCGGGGCGG 
    TATATTGCTA TACGTGTCGA TTTGGAATTT CTAAGTTTCT CTTTTTTTTT 
    TGGCCTAATT CAAAAAACTT ANAGAAATTA AAAACNTNTG ANAATTACNT 
    TNTGTCCAAA GTCCATCCTC AANAACTCAG NGTCTTAANA NAAAAGGAGG 
    TAATTTTGTA AGTTNGGGNC CTTAAAACAA AAAAATTNCN ATTNCTANTC 
    GNGGAAAGAG NGATNGGGAA AGCTTTTTTT TTTTTTCAAA AACCGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22166233 [Map]; Strand: w
      • AT5G54560.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 4017; Region: intergenic
      • AT5G54569.1 - [+] show detail - other RNA
        Distance: -1116; Region: intergenic
    Flanking Genome Sequence: 53-3873-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TCATAAAGTA GGTTAAGGCT AATGTTTGTT AAAAGTGTTT TTGGACTATT 
    TTGTGTAACT TAGTTGGGTC ATAAAAACAA GTTGGCTAAT ATTTGATCAT 
    ATTTGGGTCC ATTGTAGTTA CTGATTGTAG ATACATTCAC CTTTGTTCAC 
    ACACAAATTT GTACAAAAAT CATCCGACTT ATTGAATGGT TATGAAAAGT 
    ATGTATTCCG GCTTTTTACT ATCAAATATC TATCATGGTA AAACATATTT 
    AATATATGAA AGCTACAAAT AGTTCTTTTA AGTTGAATGG GTTGAAAATA 
    TTAAGTTGAA AAATTTGGGT TGATAATTGA CATCATTCAA TCCATTCATT 
    TAGAAAAATG TAGTTGTTTA CATCGTTGAG TCTCATCATC TCTTTTTGTT 
    GACCTTCTTT TAGATATTTG GCGGCTTGAT CATTTTTGTC ACTTTTGTAG 
    TTAAAAGTTT GGTTAAGATT TTAATTTTTG GGCATCATCA ATGGTAGTAT 
    ATTAACTTGG GGTTCTTAAA AAATAATCAA ATATTATTGT AGTTGTAAGA 
    TTACTTTATA TTCATCTCTT TCACCTCTTA ACTCATTGAT TCATGTATTA 
    AATCTCTCTC ACAAAATCCA CCATACTTTG AAATCCAAAA GTAGTATAAA 
    TTTTTTCTAA AGCACCTAAA GTAAATTTGC AAAATTTTCA AAATTTATTC 
    ATTAAAGATT GTTAAGAGTC T

AT5G54560.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT5G54550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54569.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G54570
Link
InterPro Scan - TAIR

AT5G54790.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54800.1

Model type
Protein coding
Short Description
glucose 6-phosphate/phosphate translocator 1
Curator Summary
Encodes glucose6-Phosphate/phosphate transporter 1. Essential for pollen maturation and embryo sac development.
Computational Description
glucose 6-phosphate/phosphate translocator 1 (GPT1); FUNCTIONS IN: antiporter activity, glucose-6-phosphate transmembrane transporter activity; INVOLVED IN: vacuole organization, pollen maturation, embryo sac development, response to nematode, lipid particle organization; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate/phosphate translocator 2 (TAIR:AT1G61800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR