1. Home
  2. Mutant Lines
  3. 53-3880-1

53-3880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17461390 [Map]; Strand: w
      • AT4G37060.2 - [+] show detail - PATATIN-like protein 5
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 53-3880-1 - 5-prime edge 
    CNCACATGAN NGNNANCNNA TGGACTANGA GCTGGGAGNT ACTGTATNNA 
    CTTATGAGAT GGCTGANNAC GTNGNNGGAG NATGAGAGAC TTTANGCACC 
    CATTAAGNGG ACATGGACCA ACNTGANAGC CTCTNAANCC AGGCTNNNCN 
    NCANNGACAT CTANCNAATG CATNNCCGNN CCACAAGGGG ANTNAGCCCN 
    NTAAANAATT TCTNTCNTGN CCTGANNTGA NAAAANGGCT TGTATTTCCG 
    NCTTCCNAGA NNNANAGTGA TCCGAGNGAT GANTNTAAAG NCCTTAACGG 
    AGGGCNGATT NCCTCCTTAA NCTNCTNTCC TCGGATAGGA TTTTAGCCCC 
    CCCNCATTTC CANNGTNNNA NNNNGANATC NCTNNNGNNC CGAGAACCCC 
    ACTNTGNGGN TAAAAACATT TGAAACTTAT TAATTCACCT CTTGAGTTGT 
    TCATCATTGT TAATATTTTC AGCAGCAGGT TCATATGTAC CAGTGTCGAT 
    GTTCATTTGC ATGACTCTGT TTGTCAGCAT CTTCTCTCCA AGTTTTATAA 
    GATTTTCTAA ATTAGACTTT GTCGATAGAT CCAGAGTGCT TGCATCTCCT 
    TCCAATGTAT CATCCTGCAT GGATTTTCAT ACATAAAACA ATCCAATCAA 
    TCAAACGATC AATCAGAAAT TAGGAGACAC ACATATATAT ATTTATATGT 
    AGCTCTTACG TACN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17461311 [Map]; Strand: w
      • AT4G37050.1 - [+] show detail - PATATIN-like protein 4
        Distance: -1541; Region: intergenic
      • AT4G37060.2 - [+] show detail - PATATIN-like protein 5
        Distance: 55; Region: intergenic
    Flanking Genome Sequence: 53-3880-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT CAACTGGGAA 
    CGGTCGAGTT ATGCAATTCT TCACGTATCA ACTTATATTG AACCTCTCTA 
    TAAATTAAAT CAAGTTAGTC AATCACTATA GCATCATGAT GTTGGAAAAA 
    ATAAAATCTC TATCCTCATT ATATGTAAAA AAATGTGGTC AAATGAAGAA 
    CCAAGTAAAG TGGACAACCT TTAAAATGAT ATTATCTAAT AGTTTTGTCA 
    AATTTGATGA TTATATATAT ACAATTGTAA CGTTCTCAAG AGGACGTTTA 
    GTGTTTACAA GTTCTTGACT CTTTCAAGAA CCGTTGACAA AAATAATCGT 
    ATAAACAAAC TCATATGTAT GTTACACGCC AAAGTATATT ATCCATCTTA 
    TTACAGAATT AGGTGATTAA ACATAACTTT TGTTCTCTAA CAATAAAAAT 
    ATAAATTTTG TAAAAGGTTA AGCCAAGAAA CGAGATACGT GAAGAATTGC 
    ATAAGAGGTG TGAAGGGGTA AGATGATATT GGAGGATTAC AATTGTATGT 
    TTTTTAAATA ACACGAAAAA CATTTGACAG ATTTAACAAT CTCGCAAAAG 
    TGGACCATAG ATAGATTCTG TACTACTTGT CACGGCATGG GCATAAAATA 
    AATATTGTAG CTTGTTTTAT TTCCTAGGTT TAAAAGTTGG TGGAACTTCA 
    TATAATCAAT GAACAATGAG CAAATTTATG CGAAAGTTAC ACAAAATTAA 
    ATGTAGTAAA TAGTGATAGA

AT4G37050.1

Model type
Protein coding
Short Description
PATATIN-like protein 4
Curator Summary
Patatin-related phospholipase A. Expressed in the floral gynaecium and is induced by abscisic acid (ABA) or phosphate deficiency in roots.
Computational Description
PATATIN-like protein 4 (PLP4); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2); Has 2044 Blast hits to 2033 proteins in 371 species: Archae - 0; Bacteria - 489; Metazoa - 210; Fungi - 168; Plants - 876; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37060.2

Model type
Protein coding
Short Description
PATATIN-like protein 5
Curator Summary
Patatin-related phospholipase A. Expressed weakly in roots, cotyledons, and leaves but is transcriptionally induced by auxin. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity.
Computational Description
PATATIN-like protein 5 (PLP5); FUNCTIONS IN: phospholipase activity, nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root, leaf; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (TAIR:AT4G37070.2).
Link
InterPro Scan - TAIR