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53-3889-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16615909 [Map]; Strand: w
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3889-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACTCTGGCCT CGTTCAATCT CTTGGTCTTT 
    AAATGCCACG ATTCCCTTGA TTGCAAAGTG AAAACGTAAA TGACTGAGAA 
    ATTTTCTACG AACGTCTGAG CCGTGGAAGC TCGGGAAGAC ATGATATTTC 
    CTAACGTGGG TCGAAGAAGA AGCCATTAGA GATAGGGTAA AGAGAACTTG 
    AAGAATATAT CGGAGCGTTG CATTGACTTT GACAGGAGTT CTAATGCAGT 
    TATCCAAACA CTAAATAGAT CGAGGAGAAA CTCTCTTAGA GATTTGAATG 
    CTGATTGGTT GATTTTTTAA GTCTTCGTAT GATGGAACTT CCTCATCGCC 
    GTGGCCTCCA CTACACATAA TAAAAAACCA AAACACATTA TCAGATATTC 
    TTTTGCAAGT CACAATGAAA CAGCGATACG ATATTAAAAA AGATGATAGA 
    GAGAGAGACA GACTTTTCTC TTCTTCTGTT GTTTCTTAGA AAAGCAATCT 
    ATGGGATTCA TGAAACAATT GTGAGTGCTT GATATTAATA ACACTATAAA 
    TCTTGCAAAT GGGTTTTCTG AAATATAGCA GACTTAATCA ATTGACTTGG 
    TTATTTATTA TCTCTTTCTA CTAGTATAAC AAAACCTAAT CAGAATGTAT 
    GTCTTTTCAA TAGTTGCATA AAATATATTC TTAATGACTA GACAACTATC 
    CTAACAGTCA AAGAGAGGAT AGACA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16615907 [Map]; Strand: w
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 53-3889-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GGATCGGACC TGAACTGGTG CAAGCAATAC GAGAATCTAG AGTGTCGCTG 
    GTGGTGCTAT CTAAGAATTA CCCTTCTTCA AGCTGGTGTT TAGATGAATT 
    GGTAGAAATC TTAAAATGCA AAGAAGATCA GGAGCAGATT GTGATGCCTA 
    TATTTTACGA AATCGACCCG TCTGATGTAC GGAAACAGAG CGGTGATTTC 
    GGAAAGGCGT TTGGGAAAAC TTGTGTAGGT AAAACTAAGG AGGTGAAGCA 
    GAGATGGACC AACGCTTTGA CTGAGGCGGC AAACATAGGA GGAGAACATT 
    CTCTAAACTG GTTTGTCATT TTTTTGTTTT TTTTTGAATG AATTANTGCA 
    ACATCTTTCT TAACTAATGC TCAGTTGNGA AATTTCTTGT AATTTANACC 
    CACCAACANG ATTTTGTTTG CTTGTTTTAG GACTGATGAA NCTGANATGA 
    TTGAAAAGAT TGNCNCNGAT GTTTNNACNN CTGAATGNCN CACCNTNNNG 
    GGATTTNAAA ANATGGTGGG GACTNGACGC TCACTNGAGG AAATNGGACT 
    CTTTGNATNN NNNAANTNTN NNAANNNAAN ATTNTTNGGA NTNNGGGGNN 
    CNNNNNGANN NGNNNNANNA CCATGGNNNN ANNTTTTNCN NCCANTNNNN 
    NNANTNTANA NNAAA

AT5G41540.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR