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53-3891-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2758038 [Map]; Strand: w
      • AT3G09032.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT3G09035.1 - [+] show detail - Concanavalin A-like lectin family protein
        Distance: -782; Region: promoter
    Flanking Genome Sequence: 53-3891-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTCT TCGTGACATA TTTTTTGTTG TCTGAAATTG 
    CGGTGAAGAG AGAGAGAGAG ACAGGGCGAG GAGAAACAGA GAGAGAGAGA 
    GGGGNTGAGA GAANACCAAA TAGCNTANAC NACCAGAGAA GCGANNGGGA 
    TATTTTGAAG ACTNTATNNG GGGTGCCGGG ATNTNNAAGN GCCGAGAGGG 
    NCNNAAAAAA ANAAGGGTTG NANNGTGGGC CTANGCTTAA CTGGGGNCAN 
    GAAANGGGGN CTCNCNCCCC CTCTTTTAAN NCNAAAAGGG AANTTCTAAN 
    AANCNNGAAA AAAATCCCCC CNTTCAAAAA AAAAAAATAT TTTTTTAANN 
    AGTNGGGGGA GCGTTNTTNT TTNTNNGNNA AAAAAGACTT NNNTCCTTTT 
    NGNCTNACAC ANNAAGNTAN NTNNCTTCTG GNGGNGAGAA AANANAAAAA 
    NATTNANNNC CCCCAAANAN AACACCNCTN NCTNNCCNCT TTCTAAAAAA 
    AAAGNNGGCN GNCCNACNGG GGGGNNAGAN NCCCCCCCCC GNGGGGGGNG 
    NNNCCNCCNC CGGNAAAAAA TGANNANAAA TTTTNNNNCC CNCNNGGGGC 
    GGGANGGNNG GGNGNGAGNG GNACNNACTN GANTAGNGNN GGAGGGNGGG 
    CNANCNTTTC TTNTTTTNTT TNTTNGGGNC CCNCACCCNN NTNTTTTNGN 
    GGGGNNGGGG GGGGGNNCNA TGTGGGGGTT AAAACNCCCC CCCNTNNAAA 
    AGNGNAAGNG GGGGANGGGA ACCNCCCNAN NAAANAAAAG AGGGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12063289 [Map]; Strand: c
      • AT5G32431.1 - [+] show detail - transposable element gene
        Distance: -12821; Region: intergenic
      • AT5G32433.1 - [+] show detail - transposable element gene
        Distance: 2913; Region: intergenic
    Flanking Genome Sequence: 53-3891-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CGTCGAAGAG CATGCAAAAG AGTAAGCTTT GAGANNCNNN CAGAGGCTNG 
    GCTACGTGNT TTNGAGTCAA ATATGACTAG ATGTCATGTG TATGAGTGAG 
    TATAACAACT AGAACCGCAA CTGGATCTTA GAAGCCTATG TATTGTATCC 
    TTGTTAGAAG ATACAAAGAA AAAGCCTCAT ACGGACATCG CCTACACCAT 
    CAAAGCT

AT3G09032.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01225.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09035.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin family protein
Computational Description
Concanavalin A-like lectin family protein; FUNCTIONS IN: carbohydrate binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT3G09190.1); Has 816 Blast hits to 814 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 813; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G32431.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, hypothetical protein
Link
InterPro Scan - TAIR

AT5G32433.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 3.6e-155 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor)
Link
InterPro Scan - TAIR