1. Home
  2. Mutant Lines
  3. 53-3892-1

53-3892-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1415372 [Map]; Strand: c
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -577; Region: promoter
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: -581; Region: promoter
    Flanking Genome Sequence: 53-3892-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA GGATATGGGC AGGTGTGACG TCAATTTGTG 
    GCAATAAAAT ATCTTCTGGC TTTGGTTTTT GGTAAATTTA AAAACATTGG 
    CAAGTTGTGT TGTGTAAGGT AAGCCATAAT AACAACACCC ATGTATTATT 
    TGTGTGTGTG TGTGTGTGTG TATATCCGGN GACTAAATTG TTTCTTTGNC 
    CCCATTGGAC GACATCAAAA AAAAAATATC ACGGGCGTTT CTTGTATCAA 
    NACAAATGAN ACAGTGACGT NCACTNAATN CGAAATTGTA TAACCTAACA 
    CAAGTCCCAC TGGTTGAANC TTGGANACGA TTTNTATACT AAACCAAACT 
    CATCATATNC AATGNTATCA CTCTATTTGA GTGNTGNTGN GNNCTGTCTA 
    GTGAACAGNC NCCGNGCANG NGGTANGCNC GCCCNCNCCG AGAGGCTCGN 
    CTATTAGANC CANCGGCTCN TATNTTTTAC TGTGTNNGNN NANANNTNAA 
    AAAAAAAGGN NGNAAAAAAA AAAAAAAANA ANNGGTTATA NATACNCCNC 
    AAAAAAAA

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR