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Mutant Lines
53-3928-1

53-3928-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 8874303 [Map]; Strand: w
- AT5G25480.1 - [+] show detail - DNA methyltransferase-2
  Distance: -2041; Region: intergenic
- AT5G25490.1 - [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
  Distance: -2183; Region: intergenic

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCAT GCGTATAATA TTTAATCCCC ATAACCTATA 
TTTTAATTCC TATACATTGT AATGGTAGCA TCTCAACTTT AAGGTTAGAG 
TTGGAACCTT AAAGTTTATG AATATTACAA AACACTTTGT ATGGGGGTGG 
AGTGCATGAA AATTAGAGCT GGGATGTATA TATGGGAATA TATATGCACT 
ACATTATCTT ACATTTTACA TTGAAAAAAT ATTAGAAGAT ATTGTTCTTC 
ATTTATTTAA GTATATTTTT ACTGCTGGTG TATTCTACTG CCCTATATAT 
ATCTCGAAAG TTAAATAAAT TCATATGTTA TATAACTTTT AGTCATTCGT 
GGCATTCTTC TGTTACATCT TACTGTGGAT TTTTCGTCTT ATTATCTTAT 
AGCTGACTCT TACTTTAGAG AGACAAGTAT ACCACAATGG AAAGGGTGAT 
TTGACGGTAA AAAAAGCGAT TGCAGTGTAC CCACAAACGA CAATTTATAA 
TTTGTATGTG GGATATATAG TAAGGGAAAT AAAAATCATA GGGTTAAATA 
GAAAAAGTGA ATGAAACTGT CTTGTAGTTG TAGTAGACGA ATCAAAAGGA 
CACGTAGATG GTCAAGATAC GAACCTCAAA GCCTTTTCCC TCCCATTTAA 
TGATTCTTGG TTTTGNTTTA ATCTATAATT TTTCATGATT TTCTTAAGTC 
TTTGCTTTGA AATCACGACC GAATAAGTTC

3 prime edge [+] show sequence

Chromosome: 5; Position: 8874249 [Map]; Strand: w
- AT5G25480.1 - [+] show detail - DNA methyltransferase-2
  Distance: -1987; Region: intergenic
- AT5G25490.1 - [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
  Distance: -2237; Region: intergenic

ATTATATCTA TCCAACTCAG TCCATGGCTC CGAGCGTAAT GCCTTATCCA 
TAAGTCGCCG TAAAAGCTAA CTAACTCGAC GTCTCGACAT TGAAGAAAAA 
AGAATGGGTA ACTTAAAAAG AATATATAAA AATAATGGGA AGAATTATAG 
AAGAATCAAA ATAATTAATA AACCCACCAT ATTGTCTCGG GGAATGGTAA 
AGAAAAACTG ACGAACACAA AAGAAAAGAG AGAATCTATT CGATTATCTT 
TGGGAAATGC TTCCATGCAT CATCACTTAT CTCCCCCTTC TCCAAAGTTC 
TAGATGTCAT ATGATTTCCC CACGTCTTTT ATTTAGGATG ATACAATTAT 
CTATGCATTT GATCATTCGC AAGGACGATT AGCTGAATT

AT5G25480.1

Model type: Protein coding
Short Description: DNA methyltransferase-2
Curator Summary: Encodes a DNA methyltransferase homolog. Human Dnmt2 methylates tRNA-Asp and can methylate Arabidopsis tRNA-Asp in vitro.
Computational Description: DNA methyltransferase-2 (DNMT2); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G25490.1

Model type: Protein coding
Short Description: Ran BP2/NZF zinc finger-like superfamily protein
Computational Description: Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT3G15680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR